Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g4279 ATGGATTCCCAAGTTAGACTAAATTTCTGCCCCTTAGGAGCTTGTGCATTGGCTGGTACTGGCCTCCCAATTGATCGATTCATGACTTCGGGTGCTTTAGGATTCTCTTCTCCTTTGAGAAACAGATATCTGATGTATTGTATTATGAAGTCTTGGTTATCCCCCTCCAGAATTGCAAGATTGTCATCAGGCTTCGAGCAATTTTAA 207 42.03 MDSQVRLNFCPLGACALAGTGLPIDRFMTSGALGFSSPLRNRYLMYCIMKSWLSPSRIARLSSGFEQF 68
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 71028531 71030921 - Sed0027437.1 Sed01g4279 703583

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g4279 68 PANTHER ARGININOSUCCINATE LYASE 2 42 IPR009049 GO:0004056(PANTHER)|GO:0004056(InterPro)|GO:0005829(PANTHER)|GO:0042450(InterPro)|GO:0042450(PANTHER)
Sed01g4279 68 SUPERFAMILY L-aspartase-like 5 41 IPR008948 GO:0003824(InterPro)
Sed01g4279 68 Gene3D - 1 45 IPR024083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g4279 K01755 - - gmx:100780483 74.7146
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4279 Sed-Chr1:71028531 Sed05g1560 Sed-Chr5:29368646 9.50E-15 dispersed
Sed01g4279 Sed-Chr1:71028531 Sed03g1406 Sed-Chr3:8943719 7.80E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g518 . Blo12g00732 . Bda03g00456 . . Bma04g00431 Bma01g02585 . Cmo12g00155 . . . Car12g00183 Sed01g4279 . Cpe07g00171 Bhi04g01383 Tan02g2479 Cmetu03g0752 . Hepe10g0432 . Lcy13g1481 . . . . . . . . . . . Lsi04g02280 Csa03g04493 Chy04g00207 . . . Bda11g00800 . . . . . Sed05g1560 . . Cma12g00201 . . . . . Bhi09g02498 Tan01g3852 Cmetu04g3041 . Hepe01g2170 Mch11g0709 . Cla11g01425 Cam11g1480 Cec11g1510 Cco11g1506 Clacu11g1641 Cmu11g1459 Cre11g1877 . . . Cme04g00237