Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g4284 ATGAAGAGCGATGTTAAGATAAAAAGGGGGAGGAGAGCTGGAAAAAGGGAGAAAATTAGGAAGATAATGAGGTGTTTATGTTCTGGAGAGAAAAGAGCTGGTGGTGATATGATTCCTGCATCAGAATCACATTCGGCTTTGGCAAATTCAACTAGCGAACACTCTTCACGGATTGGCGAGAATGTCAAGAAGCCAGAAGTTGGAAATGTAGAAGAAGCCGAGTCTTCACTTCGTGAGAGCGGTTGTTTGAATTATGAGGAAGCAAGAGCATTGCTGGGAAGATATGAATATCAAAAAGGAAATATTGAAGCGGCTCTTCATGTATTTGAAGGAATAGACATCACTGCAGTGACTAGTAAGATAATGATCTCCATTGCTAGAAGAGGAGACCGTCCAAGGAGACGATCACAAAATTTTACTGCCCCGCCAATGTCTATGCATGCTGTCAGTTTACTCTTGGAAGGCATCTTTCTTAAAGCAAAATCATTGCAATGCCTTGGGAGATTTGGAGAAGCTGCTCAATCTTGCAAAGTTATTCTGGACATACTTGAATCTTCATTTCCCGAAGGCTTGCCTGAAAACTTTGGTGCTGATTGTAAATTGCAGGAGACAGTTACAAAGGCCGTCGAGCTGCTACCAGAACTATGGAAACTAGGCGATTCTTCTCAAGAAGCAATCCTTTCTTATCGGCGGGCGCTTCTTCATCAGTGGAACCTTGATCCGGGAACCACTGCTCGAATTCAAAAAGAGTTTGCCATTTTTCTTCTGTACAGTGGAAGTGAAGCATGCCCTCCGAATCTTCGGTCCCAAATGGACAGCTCATTTGTACCAAAAACCAATATTGAAGAAGCTATACTTCTATTTATGATACTACTTAGAAAAGTTGTTCTTAAAAGGATTGACTGGGATCCATCAATCTTGGATCACCTCTCCTTTGCTTTAACTATATCAGGGGGTACAAGGGCTTTAGCAGGTCAAATAGAGGAATTATCTCCTGGGATTCTACATCGAAAAGATAGGTACCGTGGCCTAGCTCTTTGTTATTATGGAGCGGGCGAAGACCTAGCTGCTTTGAATCTGTTGAGGAAGTTGTTAGGTATTCATGAGGATCCTAAATCTCTTCCTGCTTTATTAATAGCGTCGAAGATTTGTGGAGAGCATCCTGATCTTGCTGAAGAAGGAATGAGTTATGCTCGTAGAGCTCTTCAAAACTTGAATGTTGGATGTAACCAATTAGAAGGTGTTGCCAATTGTTTGTTGGGTGTCTCACTATCTGTACATTCTAAATCAGCGATTGCAGATTCCGAGCGGTCCACCAGACAATCGGAGGCAATAGAGGCCCTGGAAGCTGCGTGGAAGAAGACTAGAATGACTGATCCTAACGTTCTCTATCATTTGAGTCTAGAATATGCCAATGAGAGGAAGTTAGATGCGGCACTTCATTACGCAAAGAAGTGTCTCAAACTGGAAGGTGGATCTAATGTTAGAACTTGGTTACTAGTGGCTAGGATTCTCTCTGCCCAAAAACGATTTATGGATGGCGAAAGTATTATAAATGCAGCTCTGGAGCAGACCGGGAAATGGGATCAAGGGGAATTGCTTCGAACGAAAGCAAAGCTTCTGATTGCACAAGATGATTTGAAAGGCGCTATTGGGACTTATACTCAGCTACTTGCTGTTTTTCAAGTTCAGATTAAAAGTTTTGGCTTGGGAGATAAGAAGCTATATGAGAGCAGCAGAAATCATGTTAGAAGTTTGCAATTGGAAGTGTGGCATGATTTAGCTCTAGTCTATACTAGGCTCTTGAAATGGCACGATGCTGAAGCCTGCCTTTCAAAGTCGAAGGCCATTTGCTCTCATTCAGCTTCTAGATATCACATTACAGGTATGCAATATGAAGCAAAAGGCTTGTATAAAGAAGCTCTGAAAGCTTTTATGGCTGCTCTGGACATCGATCCTATTCATGTCCCGAGCTTGGTTTCATCTGCCGTGGTTATCAGACATCTCGGCCACCATTCGCATCCCGTTATTCGCAGCTTTTTGATGAATGCTCTACGGCTCGACCAGACAAACCACGCTGCATGGTACAATCTTGGGCTATTCTACAAATCTGAAGGAACCAAGTCTTCATTGGCAGAAGCTGTTGAATGCTTTGAGGCTGCAACTTTTCTTGAAGAGACTGCTCCTGTTGAACCCTTTAGATAA 2205 42.68 MKSDVKIKRGRRAGKREKIRKIMRCLCSGEKRAGGDMIPASESHSALANSTSEHSSRIGENVKKPEVGNVEEAESSLRESGCLNYEEARALLGRYEYQKGNIEAALHVFEGIDITAVTSKIMISIARRGDRPRRRSQNFTAPPMSMHAVSLLLEGIFLKAKSLQCLGRFGEAAQSCKVILDILESSFPEGLPENFGADCKLQETVTKAVELLPELWKLGDSSQEAILSYRRALLHQWNLDPGTTARIQKEFAIFLLYSGSEACPPNLRSQMDSSFVPKTNIEEAILLFMILLRKVVLKRIDWDPSILDHLSFALTISGGTRALAGQIEELSPGILHRKDRYRGLALCYYGAGEDLAALNLLRKLLGIHEDPKSLPALLIASKICGEHPDLAEEGMSYARRALQNLNVGCNQLEGVANCLLGVSLSVHSKSAIADSERSTRQSEAIEALEAAWKKTRMTDPNVLYHLSLEYANERKLDAALHYAKKCLKLEGGSNVRTWLLVARILSAQKRFMDGESIINAALEQTGKWDQGELLRTKAKLLIAQDDLKGAIGTYTQLLAVFQVQIKSFGLGDKKLYESSRNHVRSLQLEVWHDLALVYTRLLKWHDAEACLSKSKAICSHSASRYHITGMQYEAKGLYKEALKAFMAALDIDPIHVPSLVSSAVVIRHLGHHSHPVIRSFLMNALRLDQTNHAAWYNLGLFYKSEGTKSSLAEAVECFEAATFLEETAPVEPFR 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 71098985 71103301 - Sed0027074.1 Sed01g4284 703588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g4284 734 SUPERFAMILY TPR-like 532 706 IPR011990 GO:0005515(InterPro)
Sed01g4284 734 PANTHER PROTEIN NPG1 12 734 IPR043376 -
Sed01g4284 734 MobiDBLite consensus disorder prediction 37 61 - -
Sed01g4284 734 ProSiteProfiles TPR repeat profile. 622 655 IPR019734 GO:0005515(InterPro)
Sed01g4284 734 Gene3D Tetratricopeptide repeat domain 573 728 IPR011990 GO:0005515(InterPro)
Sed01g4284 734 SMART tpr_5 622 655 IPR019734 GO:0005515(InterPro)
Sed01g4284 734 SMART tpr_5 692 728 IPR019734 GO:0005515(InterPro)
Sed01g4284 734 SMART tpr_5 588 621 IPR019734 GO:0005515(InterPro)
Sed01g4284 734 SMART tpr_5 531 564 IPR019734 GO:0005515(InterPro)
Sed01g4284 734 SMART tpr_5 460 493 IPR019734 GO:0005515(InterPro)
Sed01g4284 734 SMART tpr_5 153 186 IPR019734 GO:0005515(InterPro)
Sed01g4284 734 SMART tpr_5 495 528 IPR019734 GO:0005515(InterPro)
Sed01g4284 734 SMART tpr_5 338 371 IPR019734 GO:0005515(InterPro)
Sed01g4284 734 Gene3D Tetratricopeptide repeat domain 42 568 IPR011990 GO:0005515(InterPro)
Sed01g4284 734 SUPERFAMILY TPR-like 441 560 IPR011990 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4284 Sed-Chr1:71098985 Sed01g4286 Sed-Chr1:71098985 0.00E+00 dispersed
Sed01g4284 Sed-Chr1:71098985 Sed01g4285 Sed-Chr1:71098985 0.00E+00 tandem
Sed01g4284 Sed-Chr1:71098985 Sed02g1422 Sed-Chr2:50377458 1.10E-236 wgd
Sed01g4284 Sed-Chr1:71098985 Sed05g0134 Sed-Chr5:825336 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g4284 K21843 - csv:101223229 1232.62