Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g4286 ATGATCTCCATTGCTAGAAGAGGAGACCGTCCAAGGAGACGATCACAAAATTTTACTGCCCCGCCAATGTCTATGCATGCTGTCAGTTTACTCTTGGAAGGCATCTTTCTTAAAGCAAAATCATTGCAATGCCTTGGGAGATTTGGAGAAGCTGCTCAATCTTGCAAAGTTATTCTGGACATACTTGAATCTTCATTTCCCGAAGGCTTGCCTGAAAACTTTGGTGCTGATTGTAAATTGCAGGAGACAGTTACAAAGGCCGTCGAGCTGCTACCAGAACTATGGAAACTAGGCGATTCTTCTCAAGAAGCAATCCTTTCTTATCGGCGGGCGCTTCTTCATCAGTGGAACCTTGATCCGGGAACCACTGCTCGAATTCAAAAAGAGTTTGCCATTTTTCTTCTGTACAGTGGAAGTGAAGCATGCCCTCCGAATCTTCGGTCCCAAATGGACAGCTCATTTGTACCAAAAACCAATATTGAAGAAGCTATACTTCTATTTATGATACTACTTAGAAAAGTTGTTCTTAAAAGGATTGACTGGGATCCATCAATCTTGGATCACCTCTCCTTTGCTTTAACTATATCAGGGGGTACAAGGGCTTTAGCAGGTCAAATAGAGGAATTATCTCCTGGGATTCTACATCGAAAAGATAGGTACCGTGGCCTAGCTCTTTGTTATTATGGAGCGGGCGAAGACCTAGCTGCTTTGAATCTGTTGAGGAAGTTGTTAGGTATTCATGAGGATCCTAAATCTCTTCCTGCTTTATTAATAGCGTCGAAGATTTGTGGAGAGCATCCTGATCTTGCTGAAGAAGGAATGAGTTATGCTCGTAGAGCTCTTCAAAACTTGAATGTTGGATGTAACCAATTAGAAGGTGTTGCCAATTGTTTGTTGGGTGTCTCACTATCTGTACATTCTAAATCAGCGATTGCAGATTCCGAGCGGTCCACCAGACAATCGGAGGCAATAGAGGCCCTGGAAGCTGCGTGGAAGAAGACTAGAATGACTGATCCTAACGTTCTCTATCATTTGAGTCTAGAATATGCCAATGAGAGGAAGTTAGATGCGGCACTTCATTACGCAAAGAAGTGTCTCAAACTGGAAGGTGGATCTAATGTTAGAACTTGGTTACTAGTGGCTAGGATTCTCTCTGCCCAAAAACGATTTATGGATGGCGAAAGTATTATAAATGCAGCTCTGGAGCAGACCGGGAAATGGGATCAAGGGGAATTGCTTCGAACGAAAGCAAAGCTTCTGATTGCACAAGATGATTTGAAAGGCGCTATTGGGACTTATACTCAGCTACTTGCTGTTTTTCAAGTTCAGATTAAAAGTTTTGGCTTGGGAGATAAGAAGCTATATGAGAGCAGCAGAAATCATGTTAGAAGTTTGCAATTGGAAGTGTGGCATGATTTAGCTCTAGTCTATACTAGGCTCTTGAAATGGCACGATGCTGAAGCCTGCCTTTCAAAGTCGAAGGCCATTTGCTCTCATTCAGCTTCTAGATATCACATTACAGGTATGCAATATGAAGCAAAAGGCTTGTATAAAGAAGCTCTGAAAGCTTTTATGGCTGCTCTGGACATCGATCCTATTCATGTCCCGAGCTTGGTTTCATCTGCCGTGGTTATCAGACATCTCGGCCACCATTCGCATCCCGTTATTCGCAGCTTTTTGATGAATGCTCTACGGCTCGACCAGACAAACCACGCTGCATGGTACAATCTTGGGCTATTCTACAAATCTGAAGGAACCAAGTCTTCATTGGCAGAAGCTGTTGAATGCTTTGAGGCTGCAACTTTTCTTGAAGAGACTGCTCCTGTTGAACCCTTTAGATAA 1842 43.0 MISIARRGDRPRRRSQNFTAPPMSMHAVSLLLEGIFLKAKSLQCLGRFGEAAQSCKVILDILESSFPEGLPENFGADCKLQETVTKAVELLPELWKLGDSSQEAILSYRRALLHQWNLDPGTTARIQKEFAIFLLYSGSEACPPNLRSQMDSSFVPKTNIEEAILLFMILLRKVVLKRIDWDPSILDHLSFALTISGGTRALAGQIEELSPGILHRKDRYRGLALCYYGAGEDLAALNLLRKLLGIHEDPKSLPALLIASKICGEHPDLAEEGMSYARRALQNLNVGCNQLEGVANCLLGVSLSVHSKSAIADSERSTRQSEAIEALEAAWKKTRMTDPNVLYHLSLEYANERKLDAALHYAKKCLKLEGGSNVRTWLLVARILSAQKRFMDGESIINAALEQTGKWDQGELLRTKAKLLIAQDDLKGAIGTYTQLLAVFQVQIKSFGLGDKKLYESSRNHVRSLQLEVWHDLALVYTRLLKWHDAEACLSKSKAICSHSASRYHITGMQYEAKGLYKEALKAFMAALDIDPIHVPSLVSSAVVIRHLGHHSHPVIRSFLMNALRLDQTNHAAWYNLGLFYKSEGTKSSLAEAVECFEAATFLEETAPVEPFR 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 71098985 71102955 - Sed0027074.3 Sed01g4286 703590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g4286 613 SMART tpr_5 467 500 IPR019734 GO:0005515(InterPro)
Sed01g4286 613 SMART tpr_5 571 607 IPR019734 GO:0005515(InterPro)
Sed01g4286 613 SMART tpr_5 32 65 IPR019734 GO:0005515(InterPro)
Sed01g4286 613 SMART tpr_5 410 443 IPR019734 GO:0005515(InterPro)
Sed01g4286 613 SMART tpr_5 217 250 IPR019734 GO:0005515(InterPro)
Sed01g4286 613 SMART tpr_5 339 372 IPR019734 GO:0005515(InterPro)
Sed01g4286 613 SMART tpr_5 501 534 IPR019734 GO:0005515(InterPro)
Sed01g4286 613 SMART tpr_5 374 407 IPR019734 GO:0005515(InterPro)
Sed01g4286 613 ProSiteProfiles TPR repeat profile. 501 534 IPR019734 GO:0005515(InterPro)
Sed01g4286 613 SUPERFAMILY TPR-like 411 585 IPR011990 GO:0005515(InterPro)
Sed01g4286 613 SUPERFAMILY TPR-like 320 439 IPR011990 GO:0005515(InterPro)
Sed01g4286 613 Gene3D Tetratricopeptide repeat domain 407 607 IPR011990 GO:0005515(InterPro)
Sed01g4286 613 Gene3D Tetratricopeptide repeat domain 200 406 IPR011990 GO:0005515(InterPro)
Sed01g4286 613 PANTHER PROTEIN NPG1 2 613 IPR043376 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4284 Sed-Chr1:71098985 Sed01g4286 Sed-Chr1:71098985 0.00E+00 dispersed
Sed01g4286 Sed-Chr1:71098985 Sed05g0134 Sed-Chr5:825336 9.60E-308 dispersed
Sed01g4285 Sed-Chr1:71098985 Sed01g4286 Sed-Chr1:71098985 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g4286 K21843 - csv:101223229 1038.48