Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g4313 ATGGAAATGGAATCCTCATACTTTTCGTTCTCCGATTCCGATTTCTCGACGGGATCCTCATTTGGATCGCCGGACGAATCCTTATTTTCATGGAGCGAATTTTTTTCGAATTACAGCGCGCTAGAAAACTCAATCTCGCCGCCGCCGGACGGATTTGTGTGCAATCAAGGATCGGAATCGGAATCGAAGGTGGCGGTGAAGGAAGAAATGGAAGTGAGCTCGATCGATTTCGAGAAGGCGGCGGAGAAGAGTTACAGAGGAGTGAGGCGGCGGCCGTGGGGGAAATACGCGGCGGAGATTAGGGATTCGACGAGGCATGGAGTGAGGGTGTGGCTGGGGACATTCGACAGCGCCGAGGCCGCGGCTCTGGCTTACGACCAAGCCGCATTTTCGATGCGAGGAGCGATGGCGGTGCTGAATTTCCCGGTGGAAATGGTGAGGGAATCGCTGAAGGAGATTCAGTACTGCTTGGAGGAAGGAGGGTCCCCGGTGGTGGCCTTGAAGAGGAAGCATTCGCTGCGAAGGAAGTCGGCGGCGGCGGCGGCGAAAACAATAGGAGTGGTGGAGAAGAAGATGAAGAGAAAGAAGAGCGTTTTCATTTTGGAAGATTTGGGAACAGAGTATTTGGAGGAGCTTTTGCTGCTGAGTTCATGTCAGGGCTTGTCTTTGAACAATCCCATCTCAATTTCACCAAACCAATTGTAA 705 52.48 MEMESSYFSFSDSDFSTGSSFGSPDESLFSWSEFFSNYSALENSISPPPDGFVCNQGSESESKVAVKEEMEVSSIDFEKAAEKSYRGVRRRPWGKYAAEIRDSTRHGVRVWLGTFDSAEAAALAYDQAAFSMRGAMAVLNFPVEMVRESLKEIQYCLEEGGSPVVALKRKHSLRRKSAAAAAKTIGVVEKKMKRKKSVFILEDLGTEYLEELLLLSSCQGLSLNNPISISPNQL 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 71258306 71259197 - Sed0019609.1 Sed01g4313 703617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g4313 234 PRINTS Ethylene responsive element binding protein signature 85 96 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g4313 234 PRINTS Ethylene responsive element binding protein signature 108 124 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g4313 234 ProSiteProfiles AP2/ERF domain profile. 84 142 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g4313 234 CDD AP2 83 143 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g4313 234 SMART rav1_2 84 148 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g4313 234 PANTHER DNA-BINDING DOMAIN 63 179 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Sed01g4313 234 FunFam Ethylene-responsive transcription factor 2 83 144 - -
Sed01g4313 234 Pfam AP2 domain 84 134 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g4313 234 Gene3D AP2/ERF domain 83 144 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g4313 234 SUPERFAMILY DNA-binding domain 84 144 IPR016177 GO:0003677(InterPro)
Sed01g4313 234 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4313 Sed-Chr1:71258306 Sed09g1060 Sed-Chr9:34167373 1.90E-46 dispersed
Sed01g4313 Sed-Chr1:71258306 Sed02g1402 Sed-Chr2:50207612 1.20E-19 wgd
Sed01g4313 Sed-Chr1:71258306 Sed04g1981 Sed-Chr4:34382617 1.60E-21 wgd
Sed01g4313 Sed-Chr1:71258306 Sed05g0107 Sed-Chr5:648617 8.50E-71 wgd
Sed01g4313 Sed-Chr1:71258306 Sed09g0686 Sed-Chr9:9901087 1.20E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37458 PF00847 AP2 1.30E-14 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g4313 K14516 - csv:101220325 224.942