Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g4320 ATGACAGGGTCTGGTTCTCCATGTGGAGCATGCAAATTCTTGAGAAGAAAATGTGTGAGAGGCTGTGTTTTTGCTCCTTATTTTTGCCATGAACAAGGAGCCACTCATTTTGCAGCTATTCATAAGGTGTTTGGAGCTAGCAATGTTTCTAAGCTTCTTGCTCGGCTTCCCGTTAGCGAGCGATGCGAGGCTGCTGTTACCATTTCTTATGAAGCTCAAGCTCGCCTTCAAGATCCTATCTATGGCTGTGTTTCTCATATCTTTGCCCTTCAACAACAGGTGGTGAGTCTTCAAGCACAACTTGCTTCGCTCAAGGAACAAGCAGCAGAAAGCATTATGAACAACTCCGTTACCGGAGGCGGGGTGAGCGAGAAGATCAATTGCAGAAAGGTTATTCCTTGTCATTTCCAAGATCTCCAAAGCTGGTTTCAATCAGACCAGTCGAACAACGTAACGCCCGAGTTCAATCCGAATCCGACTCATAATTCAGCATCAAACCCTTACAACTATGATGAGAATTATTGCATTATGGTTAACTCCCAATCCAATGAGAACTATGAACATCATCATCACATGGCCAAAATGGAGGAATGTGGATCATATGAAAGCTTTGAAGAAACCTCAGGATTTTCCATGTATACTCTTGATCACTTGCATTCAAATGTTCACCAATGGACCTTCAATGACTCTGCTCATGATGATTTACAATCAGTTGCTTTTGGCAATAGACATTGGTGA 738 42.82 MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLARLPVSERCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVSLQAQLASLKEQAAESIMNNSVTGGGVSEKINCRKVIPCHFQDLQSWFQSDQSNNVTPEFNPNPTHNSASNPYNYDENYCIMVNSQSNENYEHHHHMAKMEECGSYESFEETSGFSMYTLDHLHSNVHQWTFNDSAHDDLQSVAFGNRHW 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 71312615 71314048 + Sed0014708.1 Sed01g4320 703624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g4320 245 Pfam Lateral organ boundaries (LOB) domain 7 105 IPR004883 -
Sed01g4320 245 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Sed01g4320 245 Coils Coil 87 114 - -
Sed01g4320 245 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 238 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4320 Sed-Chr1:71312615 Sed05g0101 Sed-Chr5:585913 3.80E-106 dispersed
Sed01g4320 Sed-Chr1:71312615 Sed01g4321 Sed-Chr1:71321911 1.40E-36 tandem
Sed07g0525 Sed-Chr7:3946096 Sed01g4320 Sed-Chr1:71312615 1.20E-45 transposed
Sed01g4320 Sed-Chr1:71312615 Sed05g0100 Sed-Chr5:580011 4.20E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37459 PF03195 LOB 5.80E-36 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g4320 K13945 - csv:101214764 398.667