Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g4321 ATGGCTAATTGTAGAGATGATGATGATGATGATGATAATAATACTCATCCTCATGTGTCCGGCAGCGGCTCGTCCCCGTGCGGAGCGTGTAAGTTTCTGCGGCGTAAATGCGTAGCGGATTGCATATTTGCTCCTTACTTTTGCTGTGAACAAGGGCCTGCTCGATTTGCTGCTATTCATAAGGTGTTTGGAGCCAGTAATGTCTCTAAGTTGCTTCTTCATGTTCCCGTTCCTCATCGCTCTCAGGCTGTTCTCACCATTGCTTATGAAGCTCAAGCTCGGATTCATGACCCTGTTTATGGCTGCGTTGCTCATCTTTTCGCTCTCCAACAACAGGTGGCCTATTTGCAAACACAGCTGATGCAAGCCAAGGCTCAACTTGCACAAACCTTGATTGAATCAGGAGGGAACATGGAGATTCAATGGACAAGCAACTCAACAGGAATAATCACAAGTTATCCAAATTACCAAACACAGATTATGAACACTGAAATTTCCCCTCAAAGCTCTCTAGAATCAGCAGCCAACAATGATGAAGCTTTATTCATGATGAACTTTCAAGAGAGCCAAAGCAGATACCAACAATTCATTACTACTAAGAAATCAGCTTCTTCTCATGGTGATGTGGGAGAGCTTCAAGCTTTGGCCCTCAGAATGATGAGAAATTAA 669 43.8 MANCRDDDDDDDNNTHPHVSGSGSSPCGACKFLRRKCVADCIFAPYFCCEQGPARFAAIHKVFGASNVSKLLLHVPVPHRSQAVLTIAYEAQARIHDPVYGCVAHLFALQQQVAYLQTQLMQAKAQLAQTLIESGGNMEIQWTSNSTGIITSYPNYQTQIMNTEISPQSSLESAANNDEALFMMNFQESQSRYQQFITTKKSASSHGDVGELQALALRMMRN 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 71321911 71323352 - Sed0004873.1 Sed01g4321 703625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g4321 222 PANTHER LOB DOMAIN CONTAINING PROTEIN 23 197 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Sed01g4321 222 Pfam Lateral organ boundaries (LOB) domain 26 124 IPR004883 -
Sed01g4321 222 ProSiteProfiles LOB domain profile. 25 127 IPR004883 -
Sed01g4321 222 MobiDBLite consensus disorder prediction 1 25 - -
Sed01g4321 222 MobiDBLite consensus disorder prediction 1 16 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4321 Sed-Chr1:71321911 Sed05g0100 Sed-Chr5:580011 1.00E-81 dispersed
Sed01g4320 Sed-Chr1:71312615 Sed01g4321 Sed-Chr1:71321911 1.40E-36 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37460 PF03195 LOB 3.00E-35 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g4321 K13944 - csv:101214521 288.885