Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g4321 | ATGGCTAATTGTAGAGATGATGATGATGATGATGATAATAATACTCATCCTCATGTGTCCGGCAGCGGCTCGTCCCCGTGCGGAGCGTGTAAGTTTCTGCGGCGTAAATGCGTAGCGGATTGCATATTTGCTCCTTACTTTTGCTGTGAACAAGGGCCTGCTCGATTTGCTGCTATTCATAAGGTGTTTGGAGCCAGTAATGTCTCTAAGTTGCTTCTTCATGTTCCCGTTCCTCATCGCTCTCAGGCTGTTCTCACCATTGCTTATGAAGCTCAAGCTCGGATTCATGACCCTGTTTATGGCTGCGTTGCTCATCTTTTCGCTCTCCAACAACAGGTGGCCTATTTGCAAACACAGCTGATGCAAGCCAAGGCTCAACTTGCACAAACCTTGATTGAATCAGGAGGGAACATGGAGATTCAATGGACAAGCAACTCAACAGGAATAATCACAAGTTATCCAAATTACCAAACACAGATTATGAACACTGAAATTTCCCCTCAAAGCTCTCTAGAATCAGCAGCCAACAATGATGAAGCTTTATTCATGATGAACTTTCAAGAGAGCCAAAGCAGATACCAACAATTCATTACTACTAAGAAATCAGCTTCTTCTCATGGTGATGTGGGAGAGCTTCAAGCTTTGGCCCTCAGAATGATGAGAAATTAA | 669 | 43.8 | MANCRDDDDDDDNNTHPHVSGSGSSPCGACKFLRRKCVADCIFAPYFCCEQGPARFAAIHKVFGASNVSKLLLHVPVPHRSQAVLTIAYEAQARIHDPVYGCVAHLFALQQQVAYLQTQLMQAKAQLAQTLIESGGNMEIQWTSNSTGIITSYPNYQTQIMNTEISPQSSLESAANNDEALFMMNFQESQSRYQQFITTKKSASSHGDVGELQALALRMMRN | 222 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 71321911 | 71323352 | - | Sed0004873.1 | Sed01g4321 | 703625 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g4321 | 222 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 23 | 197 | - | GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER) | |
Sed01g4321 | 222 | Pfam | Lateral organ boundaries (LOB) domain | 26 | 124 | IPR004883 | - | |
Sed01g4321 | 222 | ProSiteProfiles | LOB domain profile. | 25 | 127 | IPR004883 | - | |
Sed01g4321 | 222 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Sed01g4321 | 222 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g4321 | Sed-Chr1:71321911 | Sed05g0100 | Sed-Chr5:580011 | 1.00E-81 | dispersed | |
Sed01g4320 | Sed-Chr1:71312615 | Sed01g4321 | Sed-Chr1:71321911 | 1.40E-36 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37460 | PF03195 | LOB | 3.00E-35 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g4321 | K13944 | - | csv:101214521 | 288.885 |