Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g4330 ATGGAAGAGGTTGAAGAGGCGAACAGAGCGGCCATAGAGAGCTGCCATCGAGTTTTGAATCTTTTGGCTCATCAAGATCAAACCCAGTTGAGGACATTAACAGTGGAAACTGGAGAAGCAGTATTCAAGTTCAGAAAAGTGGTTTCTCTTTTGAATTCTGGTTTAGGTCATGCAAGAGTTCGAAGAAGGCTTGACAAGGTTCCTTCTCTCCCTTTGCCCCAAAATACCCTCTTGGATTCCCCAATTTACAGACCAGATCCTCCCAGAAGAAATCTAAACCCTTTTCAGCCTGGTTTCAATGGTAAAGTTTCTAATTTTTGGGGAAACCCAGATTTGGAATTAGGCCAAATTGACAAAAATTCCCTCCAAATTCCCAAACAAGCTCCATCTTTAAACTTCAGCTTCCCTCAACAACAGCAGCAGCAACAACAACAACAACAGAGGATGTTGGCTCATCAGAAGCAGATGAAACAACAAGCTGAGATGATGTTTCTTAGGAATAACAATGGGATGAATCTGAATTTTGATAGCTCTAACTGTACATTGCCAATGTCGTCAGCTAGATCTTTCATTTCTTCCTTGAGTATGGACGGGAGTATTGCGGACGGGAGCTCGTTCCATTTGATCGGACCGGGGTCGACGTCCGCCGACAACAAGAGGAAGTTTTCTGGAAGGGGAGATGAAGGGAGCTTGAAATGTGGAAGCACTGGCAAATGCCATTGCTCAAAGAAGAGAAAACATAGAGTGAAGAGATCCATCAAAGTTCCTGCCATAAGCAACAAACTTGCTGATATTCCTTCTGATGATTATTCATGGAGGAAATATGGGCAGAAGCCAATTAAGGGTTCCCCTCATCCAAGGGGATACTACAAATGCAGCAGCATGAGAGGTTGTCCAGCAAGAAAGCACGTCGAGCGGTGCTTAGAAGAACCTTCAATGCTTATTGTAACGTACGAAGGCGAACACAATCACCCGAAAATGTCGACTCAATCTGCACACACTTAG 1005 43.98 MEEVEEANRAAIESCHRVLNLLAHQDQTQLRTLTVETGEAVFKFRKVVSLLNSGLGHARVRRRLDKVPSLPLPQNTLLDSPIYRPDPPRRNLNPFQPGFNGKVSNFWGNPDLELGQIDKNSLQIPKQAPSLNFSFPQQQQQQQQQQQRMLAHQKQMKQQAEMMFLRNNNGMNLNFDSSNCTLPMSSARSFISSLSMDGSIADGSSFHLIGPGSTSADNKRKFSGRGDEGSLKCGSTGKCHCSKKRKHRVKRSIKVPAISNKLADIPSDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPSMLIVTYEGEHNHPKMSTQSAHT 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 71415634 71418690 - Sed0024193.1 Sed01g4330 703634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g4330 334 Gene3D WRKY domain 250 326 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed01g4330 334 SMART WRKY_cls 266 326 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed01g4330 334 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 1 330 IPR044810 GO:0003700(InterPro)
Sed01g4330 334 ProSiteProfiles WRKY domain profile. 261 327 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed01g4330 334 Pfam Plant zinc cluster domain 227 264 IPR018872 -
Sed01g4330 334 Pfam WRKY DNA -binding domain 268 325 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed01g4330 334 FunFam WRKY transcription factor 65 250 327 - -
Sed01g4330 334 SUPERFAMILY WRKY DNA-binding domain 264 326 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4330 Sed-Chr1:71415634 Sed07g0470 Sed-Chr7:3544016 3.80E-72 dispersed
Sed01g4330 Sed-Chr1:71415634 Sed09g1075 Sed-Chr9:34485054 2.10E-86 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37463 PF03106 WRKY 2.50E-26 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g4330 - - - 0.0