Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g4347 ATGGATTTGCAGAAGGTGGCGATAAGGGAATGGTACAGGATTGTTGTTGTATGGTTTGCGGTGTCCGCGATAAGGACATGCTCTGCGGAATCATCGAGGTGCCTGATGGTGTACAAGGAAGGCGGCGCTCCGGCGGTGTTTCAATCCCCCAAATGCCCTCTCTGGAAGCTCACTTTTCAATCTCCCAGCGCCGCCCCTCATTGCCAAATTGCTATGCATCAGGGTCGGCGAAGCCATCAGGAGGACCGCACTCTTTGTTCTCTCGACATTCGAATCCCTTTCCCTAGTAAAACAGGTCTTGCGGAGATCCCTGTGGGAATCATTGCGGTTTTTGATGGTCATAATGGAGCTGAAGCCAGTGAGATGGCTTCAAATGTTTTGTTGGAGTATTTTGTCGTCCATACTTATTTTCTTCTTGATGCCACTTATTCTGGGATTTTCAAGAGACCCATCTTTCATCACCTTAGGTGGAATGGGGAAATTAGTAACCTTCATCTGGAATTAGTAAGGCTTAAATCTCTACTTCCAGAAGATTTTGATGATGATTACCATTTGGAAATTTTGAAAGAAGCACTGTTGAGAGCTATACAAGATATTGATCAAACATTTTCCAAGGAAGCACATAAAAATAATCTCATTTCAGGATCTACTGCTACTGTTATATTATTAGCAGATGCACAAATTTTGGTTGCAAACATTGGTGACTCGAAGGCTTTCTTGTGCTCTGAAAAATTTCAGTCACCTTCAGAGGCTAAAGCGACCATTTTAAGATTATACAAGCAAAAAAGAAATAGCGGTGCCTCACGGGGCTATGGAAATTATAGACCAGACTCTTTTGATGATCTGGCACATTTTTATGTCAAAGAATTGACTAGAGATCATCATCCAGATAGAGAGGATGAAAGATCTAGGGTAGAGATTTCTGGGGGTCATGTTGTTGATTGGGGTGGTGTACCTCGAGTAAATGGTCAGTTGGCTATAACCAGAGCAATTGGTGATGTGTCTTTTAAAAGCTATGGGGTTATATCTGCACCAGAAGTGACTGACTGGCAACCTTTGTCTACCAACGATAGCTATTTGGTGGCTTCATCTGATGGTATTTTTGAGAAGCTGAGCTCACAAGACGTTTGTGACTTGTTGTGGGAAATACACAATGGTGGTATGTCAAATTCTGAACAGTCTTCTTCATGCTCATACTCGTTGGCGGATTGCATTGTTAGCACTGCCTTTGAAAGGGGCAGTATGGATAACATGGCTGCTATTGTGGTTCCTTTAAGACCTGCTTTATCTTCTCCAAGGTTTCAGGAGGGGAGCTTTGTTGCACAAAGAGACTCAAGTTTTCCCATATCTGGAATAAAAAGGCTTATAAAAGAGAACTCAGCTAAGGGATTCTCTTCCAATGCTGTGCAACTGGAGCATTCTCATCCAGTCATGTCCAAGTTCAAGAGATTATTAGTTGATGGAAGACAAAATAATCTGGGATGTTTTTATCTGTCTGAGAATCTGGATGAATACAAGGATTACGTGTTGAAAACTCAAAATGAAGAAGAAGAGTATTTATGTGATCTACCCCATGCTCTTTCAGACTCTCTCAATCAGCCATATGGTGGATCTTTAAATTTGTACAATGGCCAAAGCTCGTGCTTTCATCTTGGAATTATTGGAGCTAAAGATCAGTGCTTTAATCCTGAAGGCTTTGCTAGTTTTATTGGTTTGCTCGAGTCAATTCCTTTTCATGACCCTGGTCCAGATTATCAACTATTTGAGCATTCACCACCTGTATTGAGGTATGTGCTGAAGAAAAGGTTTGGTCGTGGTTCCTATGGTGAAGTATGGCTGGCTTTTCATAGGAACTGCCAGGAAGCCTTTACTTCAGTAAGAGAGAATATTTATGATTCATGCAACTCATCTTTTGGAGACGCCAAAGTCAAAAACTGTAGCTATTCTTCAAATAGTTCTCAAGCCCATTCTCTGGAGAATAACTTGTTCGTCATGAAACGTGTTATGGTTGAAAGGGGGGCTGGAGTCTATTTGAGTGGCTTGCGGGAGAAATATTTTGGTGAACTTTTTTTGAATGCTTCTACACGCCTCGGAGATGTGTTGTCGACTGGAACATCAAACTTAGTCTTTGAAGAGTCACCTTGGGTATCTAAAGGCCTATTGGTAAAGGATGAATCACTGAGTTATAGAATCGGGGAAACTAGGCCTTTTAAAAACACTTTTCCCAATCAGTTTGGACCAAAGAGTGTTATCTATGAAGACGGTTTAAATCATATTGTGAGATACGTAGAATCTCTTGAATCTCGGTCTAATGAAATATGGCTTGTATTTCATTATGAAGGCATATCTCTCTCGAAGCTCATATATTCCATTGAAGATGCTGATGAAGAAAAAGTTGAACAGAAGAGCCACGTTCAAATTTTACGCCCTTCTAAGTGGTGGCATTGGTTGAAATCAACAGAAGCAGGACAAGAGGAAATGAAAAATTTGATACGTCAGTTGTTGATGGCACTCAAGTCTTGCCATGACCGCAATATCACTCACAGGGATATTAAACCTGAGAACATGGTGATATGCTTCGAGGATCAAGCTACTGGAAAATGCTTGAATGCAAGTCGAAGGGGGGATGTGAACTTCTCTACTAAAATGCGCATTATTGACTTTGGTAGCGCTATTGATGAATTCACAGTTAAACATCTATATGGGTCTACTGGGCCTTCCAGAGCGGAGCAGACTTATGATTACACACCTCCTGAAGCCTTGCTTAATTCAAGTTGGTATCAGGAGATGTCAAGTGCAACTTTGAAGTATGATATGTGGAGCGTTGGAGTAGTGATGCTAGAATTGATCTTAGGATCACCCAATGTTTTTCAGGTAAGTGATTTAACCCGTGTTCTTTTGGACCACCATCTTCAGGGTTGGAATGAAGGCTTAAAGCAGCTAGCCTACAAGCTCAGGTCGTTCATGGAGTTGTGCATTTTAATTCCTGGGAGTATCCCAAAAGGTTATAGAAAAGATCACGGAGGTTCACCAGCATCCTGGAAATGCTCTGAAGAAGTTTTTGCCCACCATATAAAGAGTAGAGATCCTCTTAAATTAGGGTCAGTTCATTATTATTGTATTTTTTTTTCTTCTCTCATGATATTCTGA 3150 41.14 MDLQKVAIREWYRIVVVWFAVSAIRTCSAESSRCLMVYKEGGAPAVFQSPKCPLWKLTFQSPSAAPHCQIAMHQGRRSHQEDRTLCSLDIRIPFPSKTGLAEIPVGIIAVFDGHNGAEASEMASNVLLEYFVVHTYFLLDATYSGIFKRPIFHHLRWNGEISNLHLELVRLKSLLPEDFDDDYHLEILKEALLRAIQDIDQTFSKEAHKNNLISGSTATVILLADAQILVANIGDSKAFLCSEKFQSPSEAKATILRLYKQKRNSGASRGYGNYRPDSFDDLAHFYVKELTRDHHPDREDERSRVEISGGHVVDWGGVPRVNGQLAITRAIGDVSFKSYGVISAPEVTDWQPLSTNDSYLVASSDGIFEKLSSQDVCDLLWEIHNGGMSNSEQSSSCSYSLADCIVSTAFERGSMDNMAAIVVPLRPALSSPRFQEGSFVAQRDSSFPISGIKRLIKENSAKGFSSNAVQLEHSHPVMSKFKRLLVDGRQNNLGCFYLSENLDEYKDYVLKTQNEEEEYLCDLPHALSDSLNQPYGGSLNLYNGQSSCFHLGIIGAKDQCFNPEGFASFIGLLESIPFHDPGPDYQLFEHSPPVLRYVLKKRFGRGSYGEVWLAFHRNCQEAFTSVRENIYDSCNSSFGDAKVKNCSYSSNSSQAHSLENNLFVMKRVMVERGAGVYLSGLREKYFGELFLNASTRLGDVLSTGTSNLVFEESPWVSKGLLVKDESLSYRIGETRPFKNTFPNQFGPKSVIYEDGLNHIVRYVESLESRSNEIWLVFHYEGISLSKLIYSIEDADEEKVEQKSHVQILRPSKWWHWLKSTEAGQEEMKNLIRQLLMALKSCHDRNITHRDIKPENMVICFEDQATGKCLNASRRGDVNFSTKMRIIDFGSAIDEFTVKHLYGSTGPSRAEQTYDYTPPEALLNSSWYQEMSSATLKYDMWSVGVVMLELILGSPNVFQVSDLTRVLLDHHLQGWNEGLKQLAYKLRSFMELCILIPGSIPKGYRKDHGGSPASWKCSEEVFAHHIKSRDPLKLGSVHYYCIFFSSLMIF 1049
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 71467210 71493547 + Sed0003144.3 Sed01g4347 703651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g4347 1049 SMART serkin_6 597 989 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g4347 1049 SUPERFAMILY PP2C-like 57 426 IPR036457 -
Sed01g4347 1049 ProSiteProfiles Protein kinase domain profile. 597 1026 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g4347 1049 PANTHER PROTEIN PHOSPHATASE 68 424 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed01g4347 1049 SUPERFAMILY Protein kinase-like (PK-like) 755 992 IPR011009 -
Sed01g4347 1049 Pfam Protein phosphatase 2C 187 243 IPR001932 -
Sed01g4347 1049 Pfam Protein phosphatase 2C 288 417 IPR001932 -
Sed01g4347 1049 CDD PP2Cc 74 425 IPR001932 -
Sed01g4347 1049 SMART PP2C_4 58 423 IPR001932 -
Sed01g4347 1049 Gene3D Transferase(Phosphotransferase) domain 1 808 1035 - -
Sed01g4347 1049 ProSiteProfiles PPM-type phosphatase domain profile. 67 425 IPR001932 -
Sed01g4347 1049 ProSitePatterns Serine/Threonine protein kinases active-site signature. 846 858 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g4347 1049 Pfam Protein kinase domain 804 957 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g4347 1049 Gene3D - 62 428 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4345 Sed-Chr1:71467210 Sed01g4347 Sed-Chr1:71467210 0.00E+00 dispersed
Sed01g4347 Sed-Chr1:71467210 Sed01g4349 Sed-Chr1:71467210 0.00E+00 dispersed
Sed01g4346 Sed-Chr1:71467210 Sed01g4347 Sed-Chr1:71467210 0.00E+00 tandem
Sed01g4347 Sed-Chr1:71467210 Sed01g4348 Sed-Chr1:71467210 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78760 PF00069 Pkinase 1.30E-20 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g4347 - - - 0.0