Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g4348 ATGGATTTGCAGAAGGTGGCGATAAGGGAATGGTACAGGATTGTTGTTGTATGGTTTGCGGTGTCCGCGATAAGGACATGCTCTGCGGAATCATCGAGGTGCCTGATGGTGTACAAGGAAGGCGGCGCTCCGGCGGTGTTTCAATCCCCCAAATGCCCTCTCTGGAAGCTCACTTTTCAATCTCCCAGCGCCGCCCCTCATTGCCAAATTGCTATGCATCAGGGTCGGCGAAGCCATCAGGAGGACCGCACTCTTTGTTCTCTCGACATTCGAATCCCTTTCCCTAGTAAAACAGGTCTTGCGGAGATCCCTGTGGGAATCATTGCGGTTTTTGATGGTCATAATGGAGCTGAAGCCAGTGAGATGGCTTCAAATGTTTTGTTGGAGTATTTTGTCGTCCATACTTATTTTCTTCTTGATGCCACTTATTCTGGGATTTTCAAGAGACCCATCTTTCATCACCTTAGGTGGAATGGGGAAATTAGTAACCTTCATCTGGAATTAGTAAGGCTTAAATCTCTACTTCCAGAAGATTTTGATGATGATTACCATTTGGAAATTTTGAAAGAAGCACTGTTGAGAGCTATACAAGATATTGATCAAACATTTTCCAAGGAAGCACATAAAAATAATCTCATTTCAGGATCTACTGCTACTGTTATATTATTAGCAGATGCACAAATTTTGGTTGCAAACATTGGTGACTCGAAGGCTTTCTTGTGCTCTGAAAAATTTCAGTCACCTTCAGAGGCTAAAGCGACCATTTTAAGATTATACAAGCAAAAAAGAAATAGCGGTGCCTCACGGGGCTATGGAAATTATAGACCAGACTCTTTTGATGATCTGGCACATTTTTATGTCAAAGAATTGACTAGAGATCATCATCCAGATAGAGAGGATGAAAGATCTAGGGTAGAGATTTCTGGGGGTCATGTTGTTGATTGGGGTGGTGTACCTCGAGTAAATGGTCAGTTGGCTATAACCAGAGCAATTGGTGATGTGTCTTTTAAAAGCTATGGGGTTATATCTGCACCAGAAGTGACTGACTGGCAACCTTTGTCTACCAACGATAGCTATTTGGTGGCTTCATCTGATGGTATTTTTGAGAAGCTGAGCTCACAAGACGTTTGTGACTTGTTGTGGGAAATACACAATGGTGGTATGTCAAATTCTGAACAGTCTTCTTCATGCTCATACTCGTTGGCGGATTGCATTGTTAGCACTGCCTTTGAAAGGGGCAGTATGGATAACATGGCTGCTATTGTGGTTCCTTTAAGACCTGCTTTATCTTCTCCAAGGTTTCAGGAGGGGAGCTTTGTTGCACAAAGAGACTCAAGTTTTCCCATATCTGGAATAAAAAGGCTTATAAAAGAGAACTCAGCTAAGGGATTCTCTTCCAATGCTGTGCAACTGGAGCATTCTCATCCAGTCATGTCCAAGTTCAAGAGATTATTAGTTGATGGAAGACAAAATAATCTGGGATGTTTTTATCTGTCTGAGAATCTGGATGAATACAAGGATTACGTGTTGAAAACTCAAAATGAAGAAGAAGAGTATTTATGTGATCTACCCCATGCTCTTTCAGACTCTCTCAATCAGCCATATGGTGGATCTTTAAATTTGTACAATGGCCAAAGCTCGTGCTTTCATCTTGGAATTATTGGAGCTAAAGATCAGTGCTTTAATCCTGAAGGCTTTGCTAGTTTTATTGGTTTGCTCGAGTCAATTCCTTTTCATGACCCTGGTCCAGATTATCAACTATTTGAGCATTCACCACCTGTATTGAGGTATGTGCTGAAGAAAAGGTTTGGTCGTGGTTCCTATGGTGAAGTATGGCTGGCTTTTCATAGGAACTGCCAGGAAGCCTTTACTTCAGTAAGAGAGAATATTTATGATTCATGCAACTCATCTTTTGGAGACGCCAAAGTCAAAAACTGTAGCTATTCTTCAAATAGTTCTCAAGCCCATTCTCTGGAGAATAACTTGTTCGTCATGAAACGTGTTATGGTTGAAAGGGGGGCTGGAGTCTATTTGAGTGGCTTGCGGGAGAAATATTTTGGTGAACTTTTTTTGAATGCTTCTACACGCCTCGGAGATGTGTTGTCGACTGGAACATCAAACTTAGTCTTTGAAGAGTCACCTTGGGTATCTAAAGGCCTATTGGTAAAGGATGAATCACTGAGTTATAGAATCGGGGAAACTAGGCCTTTTAAAAACACTTTTCCCAATCAGTTTGGACCAAAGAGTGTTATCTATGAAGACGGTTTAAATCATATTGTGAGATACGTAGAATCTCTTGAATCTCGGTCTAATGAAATATGGCTTGTATTTCATTATGAAGGCATATCTCTCTCGAAGCTCATATATTCCATTGAAGATGCTGATGAAGAAAAAGTTGAACAGAAGAGCCACGTTCAAATTTTACGCCCTTCTAAGTGGTGGCATTGGTTGAAATCAACAGAAGCAGGACAAGAGGAAATGAAAAATTTGATACGTCAGTTGTTGATGGCACTCAAGTCTTGCCATGACCGCAATATCACTCACAGGGATATTAAACCTGAGAACATGGTGATATGCTTCGAGGATCAAGCTACTGGAAAATGCTTGAATGCAAGTCGAAGGGGGGATGTGAACTTCTCTACTAAAATGCGCATTATTGACTTTGGTAGCGCTATTGATGAATTCACAGTTAAACATCTATATGGGTCTACTGGGCCTTCCAGAGCGGAGCAGACTTATGATTACACACCTCCTGAAGCCTTGCTTAATTCAAGTTGGTATCAGGAGATGTCAAGTGCAACTTTGAAGTATGATATGTGGAGCGTTGGAGTAGTGATGCTAGAATTGATCTTAGGATCACCCAATGTTTTTCAGGTAAGTGATTTAACCCGTGTTCTTTTGGACCACCATCTTCAGGGTTGGAATGAAGGCTTAAAGCAGCTAGCCTACAAGCTCAGGTCGTTCATGGAGTTGTGCATTTTAATTCCTGGGAGTATCCCAAAAGCACGGAGGTTCACCAGCATCCTGGAAATGCTCTGA 3039 41.59 MDLQKVAIREWYRIVVVWFAVSAIRTCSAESSRCLMVYKEGGAPAVFQSPKCPLWKLTFQSPSAAPHCQIAMHQGRRSHQEDRTLCSLDIRIPFPSKTGLAEIPVGIIAVFDGHNGAEASEMASNVLLEYFVVHTYFLLDATYSGIFKRPIFHHLRWNGEISNLHLELVRLKSLLPEDFDDDYHLEILKEALLRAIQDIDQTFSKEAHKNNLISGSTATVILLADAQILVANIGDSKAFLCSEKFQSPSEAKATILRLYKQKRNSGASRGYGNYRPDSFDDLAHFYVKELTRDHHPDREDERSRVEISGGHVVDWGGVPRVNGQLAITRAIGDVSFKSYGVISAPEVTDWQPLSTNDSYLVASSDGIFEKLSSQDVCDLLWEIHNGGMSNSEQSSSCSYSLADCIVSTAFERGSMDNMAAIVVPLRPALSSPRFQEGSFVAQRDSSFPISGIKRLIKENSAKGFSSNAVQLEHSHPVMSKFKRLLVDGRQNNLGCFYLSENLDEYKDYVLKTQNEEEEYLCDLPHALSDSLNQPYGGSLNLYNGQSSCFHLGIIGAKDQCFNPEGFASFIGLLESIPFHDPGPDYQLFEHSPPVLRYVLKKRFGRGSYGEVWLAFHRNCQEAFTSVRENIYDSCNSSFGDAKVKNCSYSSNSSQAHSLENNLFVMKRVMVERGAGVYLSGLREKYFGELFLNASTRLGDVLSTGTSNLVFEESPWVSKGLLVKDESLSYRIGETRPFKNTFPNQFGPKSVIYEDGLNHIVRYVESLESRSNEIWLVFHYEGISLSKLIYSIEDADEEKVEQKSHVQILRPSKWWHWLKSTEAGQEEMKNLIRQLLMALKSCHDRNITHRDIKPENMVICFEDQATGKCLNASRRGDVNFSTKMRIIDFGSAIDEFTVKHLYGSTGPSRAEQTYDYTPPEALLNSSWYQEMSSATLKYDMWSVGVVMLELILGSPNVFQVSDLTRVLLDHHLQGWNEGLKQLAYKLRSFMELCILIPGSIPKARRFTSILEML 1012
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 71467210 71493547 + Sed0003144.4 Sed01g4348 703652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g4348 1012 Gene3D Transferase(Phosphotransferase) domain 1 808 1007 - -
Sed01g4348 1012 Pfam Protein kinase domain 804 957 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g4348 1012 SUPERFAMILY PP2C-like 57 426 IPR036457 -
Sed01g4348 1012 ProSiteProfiles Protein kinase domain profile. 597 1012 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g4348 1012 CDD PP2Cc 74 425 IPR001932 -
Sed01g4348 1012 SMART serkin_6 597 1008 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g4348 1012 SMART PP2C_4 58 423 IPR001932 -
Sed01g4348 1012 Gene3D - 62 428 IPR036457 -
Sed01g4348 1012 PANTHER PROTEIN PHOSPHATASE 68 424 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed01g4348 1012 ProSiteProfiles PPM-type phosphatase domain profile. 67 425 IPR001932 -
Sed01g4348 1012 ProSitePatterns Serine/Threonine protein kinases active-site signature. 846 858 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g4348 1012 Pfam Protein phosphatase 2C 288 417 IPR001932 -
Sed01g4348 1012 Pfam Protein phosphatase 2C 187 243 IPR001932 -
Sed01g4348 1012 SUPERFAMILY Protein kinase-like (PK-like) 755 993 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4348 Sed-Chr1:71467210 Sed01g4350 Sed-Chr1:71467210 0.00E+00 dispersed
Sed01g4347 Sed-Chr1:71467210 Sed01g4348 Sed-Chr1:71467210 0.00E+00 tandem
Sed01g4348 Sed-Chr1:71467210 Sed01g4349 Sed-Chr1:71467210 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78761 PF00481 PP2C 8.70E-36 CL0238 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g4348 - - - 0.0