Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g4350 ATGGATTTGCAGAAGGTGGCGATAAGGGAATGGTACAGGATTGTTGTTGTATGGTTTGCGGTGTCCGCGATAAGGACATGCTCTGCGGAATCATCGAGGTGCCTGATGGTGTACAAGGAAGGCGGCGCTCCGGCGGTGTTTCAATCCCCCAAATGCCCTCTCTGGAAGCTCACTTTTCAATCTCCCAGCGCCGCCCCTCATTGCCAAATTGCTATGCATCAGGGTCGGCGAAGCCATCAGGAGGACCGCACTCTTTGTTCTCTCGACATTCGAATCCCTTTCCCTAGTAAAACAGGTCTTGCGGAGATCCCTGTGGGAATCATTGCGGTTTTTGATGGTCATAATGGAGCTGAAGCCAGTGAGATGGCTTCAAATGTTTTGTTGGAGTATTTTGTCGTCCATACTTATTTTCTTCTTGATGCCACTTATTCTGGGATTTTCAAGAGACCCATCTTTCATCACCTTAGGTGGAATGGGGAAATTAGTAACCTTCATCTGGAATTAGTAAGGCTTAAATCTCTACTTCCAGAAGATTTTGATGATGATTACCATTTGGAAATTTTGAAAGAAGCACTGTTGAGAGCTATACAAGATATTGATCAAACATTTTCCAAGGAAGCACATAAAAATAATCTCATTTCAGGATCTACTGCTACTGTTATATTATTAGCAGATGCACAAATTTTGGTTGCAAACATTGGTGACTCGAAGGCTTTCTTGTGCTCTGAAAAATTTCAGTCACCTTCAGAGGCTAAAGCGACCATTTTAAGATTATACAAGCAAAAAAGAAATAGCGGTGCCTCACGGGGCTATGGAAATTATAGACCAGACTCTTTTGATGATCTGGCACATTTTTATGTCAAAGAATTGACTAGAGATCATCATCCAGATAGAGAGGATGAAAGATCTAGGGTAGAGATTTCTGGGGGTCATGTTGTTGATTGGGGTGGTGTACCTCGAGTAAATGGTCAGTTGGCTATAACCAGAGCAATTGGTGATGTGTCTTTTAAAAGCTATGGGGTTATATCTGCACCAGAAGTGACTGACTGGCAACCTTTGTCTACCAACGATAGCTATTTGGTGGCTTCATCTGATGGTATTTTTGAGAAGCTGAGCTCACAAGACGTTTGTGACTTGTTGTGGGAAATACACAATGGTGGTATGTCAAATTCTGAACAGTCTTCTTCATGCTCATACTCGTTGGCGGATTGCATTGTTAGCACTGCCTTTGAAAGGGGCAGTATGGATAACATGGCTGCTATTGTGGTTCCTTTAAGACCTGCTTTATCTTCTCCAAGGTTTCAGGAGGGGAGCTTTGTTGCACAAAGAGACTCAAGTTTTCCCATATCTGGAATAAAAAGGCTTATAAAAGAGAACTCAGCTAAGGGATTCTCTTCCAATGCTGTGCAACTGGAGCATTCTCATCCAGTCATGTCCAAGTTCAAGAGATTATTAGTTGATGGAAGACAAAATAATCTGGGATGTTTTTATCTGTCTGAGAATCTGGATGAATACAAGGATTACGTGTTGAAAACTCAAAATGAAGAAGAAGAGTATTTATGTGATCTACCCCATGCTCTTTCAGACTCTCTCAATCAGCCATATGGTGGATCTTTAAATTTGTACAATGGCCAAAGCTCGTGCTTTCATCTTGGAATTATTGGAGCTAAAGATCAGTGCTTTAATCCTGAAGGCTTTGCTAGTTTTATTGGTTTGCTCGAGTCAATTCCTTTTCATGACCCTGGTCCAGATTATCAACTATTTGAGCATTCACCACCTGTATTGAGGTATGTGCTGAAGAAAAGGTTTGGTCGTGGTTCCTATGGTGAAGTATGGCTGGCTTTTCATAGGAACTGCCAGGAAGCCTTTACTTCAGTAAGAGAGAATATTTATGATTCATGCAACTCATCTTTTGGAGACGCCAAAGTCAAAAACTGTAGCTATTCTTCAAATAGTTCTCAAGCCCATTCTCTGGAGAATAACTTGTTCGTCATGAAACGTGTTATGGTTGAAAGGGGGGCTGGAGTCTATTTGAGTGGCTTGCGGGAGAAATATTTTGGTGAACTTTTTTTGAATGCTTCTACACGCCTCGGAGATGTGTTGTCGACTGGAACATCAAACTTAGTCTTTGAAGAGTCACCTTGGGTATCTAAAGGCCTATTGGTAAAGGATGAATCACTGAGTTATAGAATCGGGGAAACTAGGCCTTTTAAAAACACTTTTCCCAATCAGTTTGGACCAAAGAGTGTTATCTATGAAGACGGTTTAAATCATATTGTGAGATACGTAGAATCTCTTGAATCTCGGTCTAATGAAATATGGCTTGTATTTCATTATGAAGGCATATCTCTCTCGAAGCTCATATATTCCATTGAAGATGCTGATGAAGAAAAAGTTGAACAGAAGAGCCACGTTCAAATTTTACGCCCTTCTAAGTGGTGGCATTGGTTGAAATCAACAGAAGCAGGACAAGAGGAAATGAAAAATTTGATACGTCAGTTGTTGATGGCACTCAAGTCTTGCCATGACCGCAATATCACTCACAGGGATATTAAACCTGAGAACATGGTGATATGCTTCGAGGATCAAGCTACTGGAAAATGCTTGAATGCAAGTCGAAGGGGGGATGTGAACTTCTCTACTAAAATGCGCATTATTGACTTTGGTAGCGCTATTGATGAATTCACAGTTAAACATCTATATGGGTCTACTGGGCCTTCCAGAGCGGAGCAGACTTATGATTACACACCTCCTGAAGCCTTGCTTAATTCAAGTTGGTATCAGGAGATGTCAAGTGCAACTTTGAAGTATGATATGTGGAGCGTTGGAGTAGTGATGCTAGAATTGATCTTAGGATCACCCAATGTTTTTCAGGTAAGTGATTTAACCCGTGTTCTTTTGGACCACCATCTTCAGGGTTGGAATGAAGGCTTAAAGCAGCTAGCCTACAAGCTCAGGTCGTTCATGGAGTTGTGCATTTTAATTCCTGGGAGTATCCCAAAAGGTTATAGAAAAGATGTTAGTGTTAGTTATTTGCGACCTTTTTCTTCCTGA 3054 41.29 MDLQKVAIREWYRIVVVWFAVSAIRTCSAESSRCLMVYKEGGAPAVFQSPKCPLWKLTFQSPSAAPHCQIAMHQGRRSHQEDRTLCSLDIRIPFPSKTGLAEIPVGIIAVFDGHNGAEASEMASNVLLEYFVVHTYFLLDATYSGIFKRPIFHHLRWNGEISNLHLELVRLKSLLPEDFDDDYHLEILKEALLRAIQDIDQTFSKEAHKNNLISGSTATVILLADAQILVANIGDSKAFLCSEKFQSPSEAKATILRLYKQKRNSGASRGYGNYRPDSFDDLAHFYVKELTRDHHPDREDERSRVEISGGHVVDWGGVPRVNGQLAITRAIGDVSFKSYGVISAPEVTDWQPLSTNDSYLVASSDGIFEKLSSQDVCDLLWEIHNGGMSNSEQSSSCSYSLADCIVSTAFERGSMDNMAAIVVPLRPALSSPRFQEGSFVAQRDSSFPISGIKRLIKENSAKGFSSNAVQLEHSHPVMSKFKRLLVDGRQNNLGCFYLSENLDEYKDYVLKTQNEEEEYLCDLPHALSDSLNQPYGGSLNLYNGQSSCFHLGIIGAKDQCFNPEGFASFIGLLESIPFHDPGPDYQLFEHSPPVLRYVLKKRFGRGSYGEVWLAFHRNCQEAFTSVRENIYDSCNSSFGDAKVKNCSYSSNSSQAHSLENNLFVMKRVMVERGAGVYLSGLREKYFGELFLNASTRLGDVLSTGTSNLVFEESPWVSKGLLVKDESLSYRIGETRPFKNTFPNQFGPKSVIYEDGLNHIVRYVESLESRSNEIWLVFHYEGISLSKLIYSIEDADEEKVEQKSHVQILRPSKWWHWLKSTEAGQEEMKNLIRQLLMALKSCHDRNITHRDIKPENMVICFEDQATGKCLNASRRGDVNFSTKMRIIDFGSAIDEFTVKHLYGSTGPSRAEQTYDYTPPEALLNSSWYQEMSSATLKYDMWSVGVVMLELILGSPNVFQVSDLTRVLLDHHLQGWNEGLKQLAYKLRSFMELCILIPGSIPKGYRKDVSVSYLRPFSS 1017
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 71467210 71487429 + Sed0003144.6 Sed01g4350 703654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g4350 1017 Pfam Protein phosphatase 2C 187 243 IPR001932 -
Sed01g4350 1017 Pfam Protein phosphatase 2C 288 417 IPR001932 -
Sed01g4350 1017 Pfam Protein kinase domain 804 957 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g4350 1017 SUPERFAMILY PP2C-like 57 426 IPR036457 -
Sed01g4350 1017 CDD PP2Cc 74 425 IPR001932 -
Sed01g4350 1017 SMART PP2C_4 58 423 IPR001932 -
Sed01g4350 1017 SUPERFAMILY Protein kinase-like (PK-like) 755 992 IPR011009 -
Sed01g4350 1017 ProSiteProfiles Protein kinase domain profile. 597 1017 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g4350 1017 Gene3D - 62 428 IPR036457 -
Sed01g4350 1017 Gene3D Transferase(Phosphotransferase) domain 1 808 1006 - -
Sed01g4350 1017 ProSiteProfiles PPM-type phosphatase domain profile. 67 425 IPR001932 -
Sed01g4350 1017 ProSitePatterns Serine/Threonine protein kinases active-site signature. 846 858 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g4350 1017 PANTHER PROTEIN PHOSPHATASE 68 424 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed01g4350 1017 SMART serkin_6 597 1008 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4348 Sed-Chr1:71467210 Sed01g4350 Sed-Chr1:71467210 0.00E+00 dispersed
Sed01g4350 Sed-Chr1:71467210 Sed01g1172 Sed-Chr1:8722188 1.30E-19 dispersed
Sed01g4349 Sed-Chr1:71467210 Sed01g4350 Sed-Chr1:71467210 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78763 PF00481 PP2C 8.70E-36 CL0238 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g4350 - - - 0.0