Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0002 ATGGAGCTCACTACTCAAGACCCTCCCATTCCCATCCCTTTGAACAGTCGCTACGGCGGCCACGACCACGATCACATCATTCACCACCATCATCATGACCCCTCCTCCGCCGCCACGCGCAACCACATCATTGCTGCTACCGCTGTCATCAACGGCACCAACCCACTCCCAACCTCTAACATGGAGACTGATCTCCACCTCTACCAAAACAACAACACCAACAACGCCAGCAACAACAAGAAGCATGTCAAATATAGAGAGTGTCTCAAGAACCACGCAGCATCCATGGGAGGCAATGCCACCGATGGCTGCGGCGAGTTCATGCCAAGTGGAGAAGAAGGCTCTATTGAAGCCCTCACATGCTCCGCCTGCAACTGTCACCGAAACTTCCATCGCAAAGAGATGGATGGAGAGCCCTATGACTGGCTCCACCACCCCCGCCTCGGTCGCAAGCTTCTCGTAGGCGGGAAGAACATGATTGCATCACCAGAGGCTGCTGCATTTGCATACCCGACTGCTGCCGGGGCGACATTCATATCATCTAGGGCCGCTGGAACAGGAGGGCAGCCCCATCACATGATCATGTCGTACAACATGCTTGGAGGGGGGCATTCGGAGTCGGAGGAGCAGGAGGAGGCAGCAGGGGCACGGGCGTATTCAGGGCAAATGATGAACAAGAAGCGGTTCCGAACAAAGTTCACGGCGGAGCAGAAGGAGAAGATGCTGAGGTTTGCAGAGGAGGCTGGGTGGAAGATTCAGAAGCAAGAGGAGAGCGTTGTGCAGCAATTCTGTCAAGAAATTGGAGTGAAGAGGAGAGTTCTTAAGGTAACTTGGCACATCATTGAGGTGGCTAGAGGAGGAAGCTGA 867 54.44 MELTTQDPPIPIPLNSRYGGHDHDHIIHHHHHDPSSAATRNHIIAATAVINGTNPLPTSNMETDLHLYQNNNTNNASNNKKHVKYRECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRKEMDGEPYDWLHHPRLGRKLLVGGKNMIASPEAAAFAYPTAAGATFISSRAAGTGGQPHHMIMSYNMLGGGHSESEEQEEAAGARAYSGQMMNKKRFRTKFTAEQKEKMLRFAEEAGWKIQKQEESVVQQFCQEIGVKRRVLKVTWHIIEVARGGS 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1350442 1353136 - Sed0027575.1 Sed02g0002 703670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0002 288 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 84 135 IPR006456 -
Sed02g0002 288 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 85 134 IPR006456 -
Sed02g0002 288 MobiDBLite consensus disorder prediction 18 36 - -
Sed02g0002 288 MobiDBLite consensus disorder prediction 1 36 - -
Sed02g0002 288 NCBIfam homeobox domain, ZF-HD class 226 276 IPR006455 -
Sed02g0002 288 Pfam ZF-HD protein dimerisation region 83 135 IPR006456 -
Sed02g0002 288 Gene3D - 209 279 - -
Sed02g0002 288 SUPERFAMILY Homeodomain-like 219 276 IPR009057 -
Sed02g0002 288 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 69 279 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0002 Sed-Chr2:1350442 Sed10g1356 Sed-Chr10:29204161 1.60E-42 dispersed
Sed02g0002 Sed-Chr2:1350442 Sed10g0916 Sed-Chr10:7184021 8.40E-36 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37473 PF04770 ZF-HD_dimer 4.10E-29 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0002 - - - 0.0