Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0002 ATGGAGCTCACTACTCAAGACCCTCCCATTCCCATCCCTTTGAACAGTCGCTACGGCGGCCACGACCACGATCACATCATTCACCACCATCATCATGACCCCTCCTCCGCCGCCACGCGCAACCACATCATTGCTGCTACCGCTGTCATCAACGGCACCAACCCACTCCCAACCTCTAACATGGAGACTGATCTCCACCTCTACCAAAACAACAACACCAACAACGCCAGCAACAACAAGAAGCATGTCAAATATAGAGAGTGTCTCAAGAACCACGCAGCATCCATGGGAGGCAATGCCACCGATGGCTGCGGCGAGTTCATGCCAAGTGGAGAAGAAGGCTCTATTGAAGCCCTCACATGCTCCGCCTGCAACTGTCACCGAAACTTCCATCGCAAAGAGATGGATGGAGAGCCCTATGACTGGCTCCACCACCCCCGCCTCGGTCGCAAGCTTCTCGTAGGCGGGAAGAACATGATTGCATCACCAGAGGCTGCTGCATTTGCATACCCGACTGCTGCCGGGGCGACATTCATATCATCTAGGGCCGCTGGAACAGGAGGGCAGCCCCATCACATGATCATGTCGTACAACATGCTTGGAGGGGGGCATTCGGAGTCGGAGGAGCAGGAGGAGGCAGCAGGGGCACGGGCGTATTCAGGGCAAATGATGAACAAGAAGCGGTTCCGAACAAAGTTCACGGCGGAGCAGAAGGAGAAGATGCTGAGGTTTGCAGAGGAGGCTGGGTGGAAGATTCAGAAGCAAGAGGAGAGCGTTGTGCAGCAATTCTGTCAAGAAATTGGAGTGAAGAGGAGAGTTCTTAAGGTAACTTGGCACATCATTGAGGTGGCTAGAGGAGGAAGCTGA 867 54.44 MELTTQDPPIPIPLNSRYGGHDHDHIIHHHHHDPSSAATRNHIIAATAVINGTNPLPTSNMETDLHLYQNNNTNNASNNKKHVKYRECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRKEMDGEPYDWLHHPRLGRKLLVGGKNMIASPEAAAFAYPTAAGATFISSRAAGTGGQPHHMIMSYNMLGGGHSESEEQEEAAGARAYSGQMMNKKRFRTKFTAEQKEKMLRFAEEAGWKIQKQEESVVQQFCQEIGVKRRVLKVTWHIIEVARGGS 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1350442 1353136 - Sed0027575.1 Sed02g0002 703670

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0002 288 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 84 135 IPR006456 -
Sed02g0002 288 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 85 134 IPR006456 -
Sed02g0002 288 MobiDBLite consensus disorder prediction 18 36 - -
Sed02g0002 288 MobiDBLite consensus disorder prediction 1 36 - -
Sed02g0002 288 NCBIfam homeobox domain, ZF-HD class 226 276 IPR006455 -
Sed02g0002 288 Pfam ZF-HD protein dimerisation region 83 135 IPR006456 -
Sed02g0002 288 Gene3D - 209 279 - -
Sed02g0002 288 SUPERFAMILY Homeodomain-like 219 276 IPR009057 -
Sed02g0002 288 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 69 279 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0002 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0002 Sed-Chr2:1350442 Sed10g1356 Sed-Chr10:29204161 1.60E-42 dispersed
Sed02g0002 Sed-Chr2:1350442 Sed10g0916 Sed-Chr10:7184021 8.40E-36 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed04g0182 . 47 238 ZF-HD Transcription Factor Family AT5G65410 55.7 8.1e-44 175.3
Sed04g0182 . 1 234 ZF-HD Transcription Factor Family AT4G24660 50.4 1.8e-52 203.8
Sed07g1780 . 60 207 ZF-HD Transcription Factor Family AT4G24660 52.7 1.4e-41 167.5
Sed04g0182 . 49 237 ZF-HD Transcription Factor Family AT2G02540 52.7 7.9e-40 162.2
Sed02g0002 . 75 279 ZF-HD Transcription Factor Family AT1G14440 52.0 2.2e-50 197.2
Sed03g0209 . 12 257 ZF-HD Transcription Factor Family AT5G15210 57.3 1.3e-51 201.1
Sed08g1335 . 13 263 ZF-HD Transcription Factor Family AT5G15210 56.2 2.3e-51 200.3
Sed06g0625 . 23 286 ZF-HD Transcription Factor Family AT5G15210 50.4 2.1e-44 177.2
Sed08g1335 . 23 251 ZF-HD Transcription Factor Family AT3G28920 64.0 1.7e-58 224.2
Sed03g0209 . 10 259 ZF-HD Transcription Factor Family AT3G28920 57.6 3.8e-58 223.0
Sed06g0625 . 22 250 ZF-HD Transcription Factor Family AT3G28920 60.2 1.5e-51 201.1
Sed03g0209 . 12 270 ZF-HD Transcription Factor Family AT5G39760 53.1 1.3e-51 201.4
Sed08g1335 . 31 256 ZF-HD Transcription Factor Family AT5G39760 56.4 7.2e-47 185.7
Sed06g0625 . 30 273 ZF-HD Transcription Factor Family AT5G39760 58.4 1.4e-45 181.4
Sed08g1335 . 62 252 ZF-HD Transcription Factor Family AT1G69600 50.5 7.5e-46 181.8
Sed04g0182 . 49 237 ZF-HD Transcription Factor Family AT2G02540 52.7 7.9e-40 162.2
Sed04g0182 . 1 234 ZF-HD Transcription Factor Family AT4G24660 50.4 1.8e-52 203.8
Sed07g1780 . 60 207 ZF-HD Transcription Factor Family AT4G24660 52.7 1.4e-41 167.5
Sed03g0209 . 12 270 ZF-HD Transcription Factor Family AT5G39760 53.1 1.3e-51 201.4
Sed08g1335 . 31 256 ZF-HD Transcription Factor Family AT5G39760 56.4 7.2e-47 185.7
Sed06g0625 . 30 273 ZF-HD Transcription Factor Family AT5G39760 58.4 1.4e-45 181.4
Sed04g0182 . 47 238 ZF-HD Transcription Factor Family AT5G65410 55.7 8.1e-44 175.3
Sed08g1335 . 62 252 ZF-HD Transcription Factor Family AT1G69600 50.5 7.5e-46 181.8
Sed03g0209 . 12 257 ZF-HD Transcription Factor Family AT5G15210 57.3 1.3e-51 201.1
Sed08g1335 . 13 263 ZF-HD Transcription Factor Family AT5G15210 56.2 2.3e-51 200.3
Sed06g0625 . 23 286 ZF-HD Transcription Factor Family AT5G15210 50.4 2.1e-44 177.2
Sed02g0002 . 75 279 ZF-HD Transcription Factor Family AT1G14440 52.0 2.2e-50 197.2
Sed08g1335 . 23 251 ZF-HD Transcription Factor Family AT3G28920 64.0 1.7e-58 224.2
Sed03g0209 . 10 259 ZF-HD Transcription Factor Family AT3G28920 57.6 3.8e-58 223.0
Sed06g0625 . 22 250 ZF-HD Transcription Factor Family AT3G28920 60.2 1.5e-51 201.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010486 1 0 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37473 PF04770 ZF-HD_dimer 4.10E-29 No_clan Sed TF