Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0010 ATGGCATTCCAAGACTTCGACCAAATCTCTGAACGTCGCCGTGTTGAGAGGGCACGCAAGTTTCGAAATAGGGTCATCATTGGCGTGGTCTCAGTGTCCGTGCTCCTCCTCATGGTGGTGGTCGTTGTGTTTGTTAAAGTCTCTCCATCTTCAAAATCAACCTCGACAAACAAAGGGGGCTCTGGCAGGAACGACGACAAGAACAATAAAAACTCCAATCAGGCTGATCGGACATCGGACATGAAGCAAGTGTCTCGTTTGGAGAAAATGATTACTACGATATGCAACTCCACAGACTACAAAGCCAAATGCGAGAGCACTTTGAAAGAAGGGGTCCACACAGACTCTAAGCCGAAAGATCTCATAATAGTGGCAATCTCAGCGACATTGGCAGAGGTGAAATCAACGGTGAAGAAAGTGAGTGCGTTGAAGTTCGCAACCCCGGAAGAAAAAGGGGCATTCGAAGACTGTAAGGGTCTTCTGGAAGATGCAGTGGAGGAATTGGAGATGTGTGAAAAGGAATTGGGGAATGTGACTGAAAAGGTGACGAGGGATGTGAACAACTGGTTGAGCGCGGTGATGTCGTATCATGAAACATGCGTAGACGGGTTTCCAGATCAAGGGAAGTTAAAATGGGAAATGGAGAAGACATTAAAGGCGGGAAAAGAACTGACCAGTAATTCTTTGGCCATGATGTCGCAGCTGCCTAATTCGTTTGAGATGCCAACTGTAACGTCCCGACGCCATCTAATGTTCGAACATGATCGGCTACCTGCTTGGATGAGCAGCAGCGAACGAAGAATGTTGAAAGACAAGCCTAAGCCTAAGCCTAATGTAGTCGTGGCCAAAGATGGGTCCGGAGATTTCAAAACTATTAACCAAGCATTGGCTGCCATGCCTTCAAAATATGATGGACGATACGAGACGGTGGTGATTACCAAAAAGATGGTGAATGTAACAATGTACGGAGATGGATCTCAAAAGACTATGATCAGTGGGAGCAAGAACTTTGGGGATGGTGTTAGAACCTTCCAAACCGCAACTTTTGTGGCAATTGGAGAACGGTTCCTAGGGCAAAGCATTGGATTCAGAAACACTGCTGGACCAGAAAAATACCAGGCTGTGGCAGCTCGAGTTCAGGCGGACCGAGCCATATTCGTGAACTGCCGATTCGAAGGGTATCAGGACACGCTATACGTGCAGACCCATCGCCAGTTCTACAGAAGCTGTCAGATAGTAGGCACAATAGACTTCATCTTCGGGGACGCGGCTGTCATTTTCCAAAACTGCAACATCATGCTAAGAAGACCTTTACAGAAGCAACAAGACACCATAACAGCACAGGGAAGGGTGGACAAACACGAAACAACAGGCATAGTGCTCCAAAAGTGCAATATTTCGGGGGATAAGAGTGTCGGGCCTGTGAAGGCGGAATTCAAAAGCTACTTGGGGAGGCCTTGGAAGGAGTTCTCTAGAACCATTGTGATGGAGTCCGCAATAGAAGATATCATAGACCCTGAGGGATGGATGCCTTGGAATGGAGATTTTGCACTCCAGACCTTGTACTATGCTGAATTTAATAACCAAGGCCCTGGGGCTAACACCCATGCTAGAGTCAAATGGCCTGGTTACAAGCTTATTGATAAGCAACAAGCTGCTAAGTTTACCGTAGGAACTTTTCTAGACCTAGATTGGATTCAGAGCTCTTCCGTTCCCGTTCATGTTGGCCTATTTTGA 1737 46.92 MAFQDFDQISERRRVERARKFRNRVIIGVVSVSVLLLMVVVVVFVKVSPSSKSTSTNKGGSGRNDDKNNKNSNQADRTSDMKQVSRLEKMITTICNSTDYKAKCESTLKEGVHTDSKPKDLIIVAISATLAEVKSTVKKVSALKFATPEEKGAFEDCKGLLEDAVEELEMCEKELGNVTEKVTRDVNNWLSAVMSYHETCVDGFPDQGKLKWEMEKTLKAGKELTSNSLAMMSQLPNSFEMPTVTSRRHLMFEHDRLPAWMSSSERRMLKDKPKPKPNVVVAKDGSGDFKTINQALAAMPSKYDGRYETVVITKKMVNVTMYGDGSQKTMISGSKNFGDGVRTFQTATFVAIGERFLGQSIGFRNTAGPEKYQAVAARVQADRAIFVNCRFEGYQDTLYVQTHRQFYRSCQIVGTIDFIFGDAAVIFQNCNIMLRRPLQKQQDTITAQGRVDKHETTGIVLQKCNISGDKSVGPVKAEFKSYLGRPWKEFSRTIVMESAIEDIIDPEGWMPWNGDFALQTLYYAEFNNQGPGANTHARVKWPGYKLIDKQQAAKFTVGTFLDLDWIQSSSVPVHVGLF 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1906781 1908638 + Sed0004558.1 Sed02g0010 703678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0010 578 CDD PMEI-like_3 93 237 - -
Sed02g0010 578 Coils Coil 154 181 - -
Sed02g0010 578 SUPERFAMILY Pectin lyase-like 275 565 IPR011050 -
Sed02g0010 578 PANTHER PECTINESTERASE 27 568 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Sed02g0010 578 Pfam Pectinesterase 278 562 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Sed02g0010 578 Gene3D - 276 578 IPR012334 -
Sed02g0010 578 ProSitePatterns Pectinesterase signature 2. 412 421 IPR033131 -
Sed02g0010 578 Pfam Plant invertase/pectin methylesterase inhibitor 90 231 IPR006501 GO:0004857(InterPro)
Sed02g0010 578 SMART PMEI_2 86 231 IPR006501 GO:0004857(InterPro)
Sed02g0010 578 NCBIfam pectinesterase inhibitor domain 88 235 IPR006501 GO:0004857(InterPro)
Sed02g0010 578 FunFam Pectinesterase 87 236 - -
Sed02g0010 578 FunFam Pectinesterase 272 577 - -
Sed02g0010 578 MobiDBLite consensus disorder prediction 50 82 - -
Sed02g0010 578 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 89 236 IPR035513 -
Sed02g0010 578 Gene3D Invertase/pectin methylesterase inhibitor family protein 87 237 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0010 Sed-Chr2:1906781 Sed07g2910 Sed-Chr7:43672743 1.60E-219 dispersed
Sed02g0010 Sed-Chr2:1906781 Sed04g1778 Sed-Chr4:32417976 2.50E-124 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0010 - - - 0.0