Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0011 ATGGATGAAAATGGTGGGATAAAGTTGAGCGGAATCCGACAGATTGTGAGGCTGAAAGCAAGTCTCCAACAGTGGCAAGCGGTCACGAAAGCAAAAGCGAAAGCTAAAGCAGCAAAAGAGAAAGAGAAAGCAAGTGGCAGGAATGAAAAACAAATGATGATGAATAGTATAAATACTACTCATGGGGCTGCCCGAATCCTTTCAGTGTCAATCAACAAGAGGTTGACCAATGTCGGGACGCTGTGTTGTGATTCGGATGAAGAGAGCAGCAGCTGCCAGAGCCCGGAGCACCTAGTGGATGTGCCAAAAGGGTATATGGCTGTGTACGTAGGGCCGGAGCTTCGGAGGTTCATCATTCCGACCGCGTATCTTAGCCACTCGGTGTTCAAGGTGTTGCTGGAAAAGGCTGAGGAGGAGTTTGGATTCGACCACACCGGGGGCCTCACGTTCCCATGCGAGATCGAGACCTTCAAATACCTTCTCAACTGCATGGAAACCCAACTCCATGACCCTCCTCTCCCCCCACCTCCAGCTGGTGCTACTTCTTTAACCATGGAAGGATGA 564 50.18 MDENGGIKLSGIRQIVRLKASLQQWQAVTKAKAKAKAAKEKEKASGRNEKQMMMNSINTTHGAARILSVSINKRLTNVGTLCCDSDEESSSCQSPEHLVDVPKGYMAVYVGPELRRFIIPTAYLSHSVFKVLLEKAEEEFGFDHTGGLTFPCEIETFKYLLNCMETQLHDPPLPPPPAGATSLTMEG 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2123348 2124017 - Sed0025674.1 Sed02g0011 703679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0011 187 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 55 164 IPR003676 GO:0009733(InterPro)
Sed02g0011 187 Pfam Auxin responsive protein 80 163 IPR003676 GO:0009733(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0011 Sed-Chr2:2123348 Sed04g2317 Sed-Chr4:36823158 7.40E-17 dispersed
Sed02g0011 Sed-Chr2:2123348 Sed14g0298 Sed-Chr14:3123204 1.50E-14 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0011 K14488 - csv:101207913 204.142