Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0014 ATGAACATAATAGCATCAGAAATTTGGTTCATCTTATCGTTTGTTGTTGTTGTTGTTGTTCTTCCCTCTGAAACCCTACTTTGTGTCTTCCTTTTCTTTTCTGGGTTGGCGATTACATATCTCTCTGATACTATCATGTCCTTTTCAGGGTCCTCTTCCTATGCCTTGTTTAGGGAATTATGGGATGCCTGCGCAGGACCCCTTGTCACCCTTCCCCGCCAAAATGAACGACTGTACTACTTTCCACAGGGTCACATGGAACAGCTGGAAGCATCCATGCATCAAGGATTAGATCAACACATGCCTTCGTTCAACCTACCATCAAAAATACTTTGTAAAGTGGTCAATGTTGTTCTCCGGGCGGAATCTGACACAGATGAAGTTTATGCTCAGATAACCCTGCTTCCAGACACCGATCAAAGGGAAGTAACCACCCCGGATCCTGCCCTTCCTGACCCACCAACATGCAATGTCCACTCTTTTTGCAAGACGCTCACTGCTTCTGACACTAGCACTCATGGAGGCTTCTCTGTTCTTAGGAGGCACGCAGATGATTGTCTGCCTCCTCTGGATATGTCTCAGCAGCCACCATGGCAAGAATTGGTTGCAACTGATTTACATGGGAATCAGTGGCATTTTCGGCACATTTTTCGAGGCCAACCAAGGCGTCATCTGCTAACAACTGGATGGAGTGTTTTTGTTAGTTCTAAAAAACTTGTAGCTGGAGATGCTTTTATCTTTTTAAGAGGTGAGGATGGAGAGCTTCGTGTTGGAGTGAGAAGACTTATGAGACAGCTGAATAACATGCCATCATCTGTTATATCGAGTCACAGCATGCATCTTGGAGTTCTTGCTACTGCTTCTCATGCTATTTCAACTGGAACTCTCTTTTCTGTTTTTTACAAGCCAAGAACAAGCAGGTCTACATTTCTTGTAAGCCTAAACAAGTACCTTGAAGCTCAAAACCATAAACTCTCTGTTGGGATGAGGTTCAAGATGAGGTTTGAGGGAGAGGAAGTTCCTGAAAGAAGTTTTAGCGGAACAATTGTTGGTCTTGGAGATAATGCATCGCCTGGGTGGGCTAATTCAGAGTGGCGATCCTTAAAGGTGCAATGGGATGAGCCTTCATCTATCCTGCGTCCAGATAGAGTGTCTGCTTGGGAATTGGAACCACTTGTTGCATCCAACCCTGTATGCTCTCAACCTACACAGCGGAACAAGCGTCCACGACCAGCTGTTTTGCCTCTACCTTCACCAGATGCAGGTGTGCTCGGTGGGTGGAAACCTATGGTTGAATCTTCTGCCTTTTCATATACTGAACCACAGCACGGGAGGGATCTATATTCTTCACCAAAGTTCATTACGGCTGCTTCAAATTCACATATTTTTAATGGGAACAGTCCTCTTGGTGCTGTGTCAAGCAACGCCTACTGGTCGTCTAGTAATACCAATAGGGTGGAAAATGTTGTGGACACTTCATCTAATGGAGCTAACAGAGAACACGTTGAAAAGAAACAGAACACTAGGAATGGGTGCAGGCTCTTCGGGATCCAGCTTCTTGGAAATTCCAACGAAGAGGAGGCTGATCCAGTTTCAACACCTAAAATGGTGGGTGAGGATAGGCCGGTTCCCCCTGTAGACACAGAACTTGACCAGCAATCTGAACCGTCAAACATTCACCGACCAGATATTCCTTCAGTAAGCTTTGATGCTGATAAATCATGCCCAATTTCCCATTTGGAGTCTCAAAGCAGACAGATACGTAGCTGCACAAAGGTGCACATGCAAGGAATTGCTGTTGGGAGGGCCGTAGATTTAACACGGTTTAATCAATATGATGATCTACTAAGGAAACTAGAGGTTATGTTTGACATAGAGGGCGAGCTCTGTGGCTCTGTAAAGAAATGGCAGGTTGTTTACACCGATGATGAAGATGATATGATGATGGTTGGGGATGATCCATGGAACGAGTTCTGCAGCATGGTAAGGAAGATATTCATCTACACTACAGAAGAAGTGAAGAGACTGTCGCCGAAGATAAAACTCCCACTCGGTGGAGAAACGAAGCTCAGAAAACCAGATTTCGATATGGTTGCCAACCACACAGAGGATCAATCGTCCATTGTCGGATCAGATTGCTGA 2142 45.1 MNIIASEIWFILSFVVVVVVLPSETLLCVFLFFSGLAITYLSDTIMSFSGSSSYALFRELWDACAGPLVTLPRQNERLYYFPQGHMEQLEASMHQGLDQHMPSFNLPSKILCKVVNVVLRAESDTDEVYAQITLLPDTDQREVTTPDPALPDPPTCNVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGNQWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGEDGELRVGVRRLMRQLNNMPSSVISSHSMHLGVLATASHAISTGTLFSVFYKPRTSRSTFLVSLNKYLEAQNHKLSVGMRFKMRFEGEEVPERSFSGTIVGLGDNASPGWANSEWRSLKVQWDEPSSILRPDRVSAWELEPLVASNPVCSQPTQRNKRPRPAVLPLPSPDAGVLGGWKPMVESSAFSYTEPQHGRDLYSSPKFITAASNSHIFNGNSPLGAVSSNAYWSSSNTNRVENVVDTSSNGANREHVEKKQNTRNGCRLFGIQLLGNSNEEEADPVSTPKMVGEDRPVPPVDTELDQQSEPSNIHRPDIPSVSFDADKSCPISHLESQSRQIRSCTKVHMQGIAVGRAVDLTRFNQYDDLLRKLEVMFDIEGELCGSVKKWQVVYTDDEDDMMMVGDDPWNEFCSMVRKIFIYTTEEVKRLSPKIKLPLGGETKLRKPDFDMVANHTEDQSSIVGSDC 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3651767 3661729 - Sed0021231.1 Sed02g0014 703682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0014 713 FunFam Auxin response factor 583 677 - -
Sed02g0014 713 Pfam B3 DNA binding domain 161 261 IPR003340 GO:0003677(InterPro)
Sed02g0014 713 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 56 678 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Sed02g0014 713 ProSiteProfiles B3 DNA-binding domain profile. 161 263 IPR003340 GO:0003677(InterPro)
Sed02g0014 713 Pfam Auxin response factor 287 369 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Sed02g0014 713 MobiDBLite consensus disorder prediction 397 419 - -
Sed02g0014 713 SUPERFAMILY DNA-binding pseudobarrel domain 150 290 IPR015300 -
Sed02g0014 713 CDD B3_DNA 159 261 IPR003340 GO:0003677(InterPro)
Sed02g0014 713 ProSiteProfiles PB1 domain profile. 588 681 IPR053793 -
Sed02g0014 713 SMART B3_2 161 263 IPR003340 GO:0003677(InterPro)
Sed02g0014 713 MobiDBLite consensus disorder prediction 523 566 - -
Sed02g0014 713 Gene3D - 158 263 IPR015300 -
Sed02g0014 713 Gene3D - 324 397 - -
Sed02g0014 713 FunFam Auxin response factor 159 263 - -
Sed02g0014 713 Pfam AUX/IAA family 635 679 IPR033389 -
Sed02g0014 713 Pfam AUX/IAA family 586 624 IPR033389 -
Sed02g0014 713 SUPERFAMILY CAD & PB1 domains 589 665 - -
Sed02g0014 713 Gene3D - 583 677 - -
Sed02g0014 713 FunFam Auxin response factor 324 396 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0014 Sed-Chr2:3651767 Sed09g0530 Sed-Chr9:5366658 2.90E-178 dispersed
Sed02g0014 Sed-Chr2:3651767 Sed13g0775 Sed-Chr13:5620801 1.70E-170 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37475 PF02309 AUX_IAA 1.30E-10 CL0072 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0014 K14486 - csv:101204612 1207.97