Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0027 ATGGGCTGCATTTGCTCTAAACGAATCCCACCAAATGACTATGTTGCTGAGAATCATTCCAAACACAGGCATTTCAAGTCCAATACATCCCTAGGGGCTTCGTTAAGGAAACAAGACGGAGGGCAATGTGATGGAATGGCGCGATTGATATCAAATCAACCTGGGGAGGAATCAGATGATGGAGCAAAGAGACTCCGAATGCATCCCACAATAATCAATGTTGTAAATGGACAAAACGGAGGTTTGGTTATTGCTGGATGGCCTTCTTGGCTCACATCTGTGGCTGGAGAAGCCATCAATGGCTGGATTCCTAGAAAGGCAGACTCTTTTCAGAAATTGGATAAGATTGGACAAGGAACATACAGCAGTGTGTACAGGGCCCGTGATATAGAAACGAACAAGATCGTTGCACTGAAAAAGGTGCGATTTGCTAATATGGATCCTGAAAGTGTTCGTTTCATGGCCAGGGAAATCCTCATCCTGCGTAGGCTTGACCACCCCAATGTCATGAAGCTTGAAGGTCTTATTACTTCAAGAGTATCTGGCAGTCTATACCTCATATTTGAGTACATGGAACATGATCTTGCCGGGTTGGCAGCAACCCCAGGGATCAAGTTCACTGAATCGCAGATAAAATGCTATATGCAACAGCTGCTTTGGGGTCTTGAACATTGTCATGCCCAGGGAGTTTTGCACCGTGACATCAAGGGATCAAATCTTTTGATTGATAATAATGGTAATCTAAAGATAGGTGATTTTGGGCTATCAACCTTTTTCCGTTCCCGACAAAAGCAGCCTCTTACAAGTCGTGTGGTAACTTTGTGGTATCGACCACCTGAGCTTTTGCTCGGTGCAACGGACTATGGAGTTTCTGTAGATTTGTGGAGTGCTGGTTGCATTCTTTCAGAATTGTATGCTGGGAAGCCCATCATGCCTGGAAGAACGGAGGTGGAGCAACTACATAAGATCTTCAAACTTTGTGGCTCCCCTTCTGAAGAGTACTGGAAAAAATCAAAATTACCTCATGCCACCATCTTTAAACCTCAACATCCTTACAAGCGTTGTGTTGCTGAGACATTCAAAGACTTCCCTTCCTCTGCATTGGCTCTTTTGGATATACTTCTTGCTGTTGAACCGGATGGTCGTGGAACGGCTTCCTCTGCCCTTCAAAGCGAGTACTTCACTACAAGACCACTTCCCTCAGACCCCTCTACTTTGCCGAAGTACCCACCAAGCAAGGAGTTTGATGTCAAGCTTCGGGATGAGGAAGCTCGAAGAAGAAGAGCTCCTAACAGTGCTGCACGTGAACATGAAGCAGCTCGAAAGATTCCCAGAGAATCTAAAGCGATTCCTGCACCAGATGCGAATGCTGAACTGCTGGCATCTATACAGAAGAAACAAGGGAAGCAGAATAATACAAGTGTCAGTGAGAATTACAATCCTGAAGAGGATGGAGGATCTGGCTTTCGAATCGAGCCCCCCAAAGAAGCAACCCAAACTCAACCTAATGCTTTGGGTCCTTCACGACACTTGAATGGGAATCAGGGTGATACTCTGAAAGGTTCTTCAGTTGAGGCAAAAGGTGCACAACTTCGAAAACAAAGATCTTATATGCACATTGGAGTTCGAGGTGGTTCACAATTTGGATGTGGTGGAGAAAGTAGTGCTAATTCGCATTGGCAAGAAGAGTGTTTTAATGTGTCATATAACCATTTCAATGGTGGTGAATCTTCAGACAAGAATGAATGGTCTCACCATTTACTAGACAGGCCAAAGTCTGCATATAAGATAGATGATCAGCCATCTGGAAAAGAGTGTGCTATGAATTACGCTCCGAAAAAGAGAATTCACTATTCAGGACCATTGATGCCTCCTGGAGGAAACCTTGAGGAAATGTTAAAAGAGCATGAGAAACAAATCCAGCATGCAGTACGCAAGGCCCGTATCGACAAAGGTAAGACTAAAAAGACGTATGGCGATAAAGGTCTATCAGAATCGTTGCTTCACCATGTAAGAAATGGGAATTGA 2028 44.38 MGCICSKRIPPNDYVAENHSKHRHFKSNTSLGASLRKQDGGQCDGMARLISNQPGEESDDGAKRLRMHPTIINVVNGQNGGLVIAGWPSWLTSVAGEAINGWIPRKADSFQKLDKIGQGTYSSVYRARDIETNKIVALKKVRFANMDPESVRFMAREILILRRLDHPNVMKLEGLITSRVSGSLYLIFEYMEHDLAGLAATPGIKFTESQIKCYMQQLLWGLEHCHAQGVLHRDIKGSNLLIDNNGNLKIGDFGLSTFFRSRQKQPLTSRVVTLWYRPPELLLGATDYGVSVDLWSAGCILSELYAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQHPYKRCVAETFKDFPSSALALLDILLAVEPDGRGTASSALQSEYFTTRPLPSDPSTLPKYPPSKEFDVKLRDEEARRRRAPNSAAREHEAARKIPRESKAIPAPDANAELLASIQKKQGKQNNTSVSENYNPEEDGGSGFRIEPPKEATQTQPNALGPSRHLNGNQGDTLKGSSVEAKGAQLRKQRSYMHIGVRGGSQFGCGGESSANSHWQEECFNVSYNHFNGGESSDKNEWSHHLLDRPKSAYKIDDQPSGKECAMNYAPKKRIHYSGPLMPPGGNLEEMLKEHEKQIQHAVRKARIDKGKTKKTYGDKGLSESLLHHVRNGN 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4187800 4216890 - Sed0016678.1 Sed02g0027 703695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0027 675 MobiDBLite consensus disorder prediction 465 481 - -
Sed02g0027 675 PANTHER CELL DIVISION PROTEIN KINASE 109 394 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Sed02g0027 675 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed02g0027 675 Coils Coil 626 646 - -
Sed02g0027 675 ProSitePatterns Protein kinases ATP-binding region signature. 116 139 IPR017441 GO:0005524(InterPro)
Sed02g0027 675 SMART serkin_6 110 394 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g0027 675 Gene3D Phosphorylase Kinase; domain 1 97 192 - -
Sed02g0027 675 ProSiteProfiles Protein kinase domain profile. 110 394 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g0027 675 MobiDBLite consensus disorder prediction 413 448 - -
Sed02g0027 675 FunFam probable serine/threonine-protein kinase At1g54610 193 434 - -
Sed02g0027 675 MobiDBLite consensus disorder prediction 648 675 - -
Sed02g0027 675 MobiDBLite consensus disorder prediction 648 667 - -
Sed02g0027 675 MobiDBLite consensus disorder prediction 494 521 - -
Sed02g0027 675 MobiDBLite consensus disorder prediction 465 523 - -
Sed02g0027 675 MobiDBLite consensus disorder prediction 393 452 - -
Sed02g0027 675 FunFam probable serine/threonine-protein kinase At1g54610 97 192 - -
Sed02g0027 675 Pfam Protein kinase domain 110 394 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g0027 675 SUPERFAMILY Protein kinase-like (PK-like) 104 401 IPR011009 -
Sed02g0027 675 CDD STKc_CDK9_like 110 394 - -
Sed02g0027 675 Gene3D Transferase(Phosphotransferase) domain 1 193 434 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0027 Sed-Chr2:4187800 Sed10g1594 Sed-Chr10:32478506 3.20E-187 dispersed
Sed02g0027 Sed-Chr2:4187800 Sed04g1587 Sed-Chr4:30652697 5.60E-192 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78764 PF00069 Pkinase 1.50E-67 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0027 - - - 0.0