Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed02g0027 | ATGGGCTGCATTTGCTCTAAACGAATCCCACCAAATGACTATGTTGCTGAGAATCATTCCAAACACAGGCATTTCAAGTCCAATACATCCCTAGGGGCTTCGTTAAGGAAACAAGACGGAGGGCAATGTGATGGAATGGCGCGATTGATATCAAATCAACCTGGGGAGGAATCAGATGATGGAGCAAAGAGACTCCGAATGCATCCCACAATAATCAATGTTGTAAATGGACAAAACGGAGGTTTGGTTATTGCTGGATGGCCTTCTTGGCTCACATCTGTGGCTGGAGAAGCCATCAATGGCTGGATTCCTAGAAAGGCAGACTCTTTTCAGAAATTGGATAAGATTGGACAAGGAACATACAGCAGTGTGTACAGGGCCCGTGATATAGAAACGAACAAGATCGTTGCACTGAAAAAGGTGCGATTTGCTAATATGGATCCTGAAAGTGTTCGTTTCATGGCCAGGGAAATCCTCATCCTGCGTAGGCTTGACCACCCCAATGTCATGAAGCTTGAAGGTCTTATTACTTCAAGAGTATCTGGCAGTCTATACCTCATATTTGAGTACATGGAACATGATCTTGCCGGGTTGGCAGCAACCCCAGGGATCAAGTTCACTGAATCGCAGATAAAATGCTATATGCAACAGCTGCTTTGGGGTCTTGAACATTGTCATGCCCAGGGAGTTTTGCACCGTGACATCAAGGGATCAAATCTTTTGATTGATAATAATGGTAATCTAAAGATAGGTGATTTTGGGCTATCAACCTTTTTCCGTTCCCGACAAAAGCAGCCTCTTACAAGTCGTGTGGTAACTTTGTGGTATCGACCACCTGAGCTTTTGCTCGGTGCAACGGACTATGGAGTTTCTGTAGATTTGTGGAGTGCTGGTTGCATTCTTTCAGAATTGTATGCTGGGAAGCCCATCATGCCTGGAAGAACGGAGGTGGAGCAACTACATAAGATCTTCAAACTTTGTGGCTCCCCTTCTGAAGAGTACTGGAAAAAATCAAAATTACCTCATGCCACCATCTTTAAACCTCAACATCCTTACAAGCGTTGTGTTGCTGAGACATTCAAAGACTTCCCTTCCTCTGCATTGGCTCTTTTGGATATACTTCTTGCTGTTGAACCGGATGGTCGTGGAACGGCTTCCTCTGCCCTTCAAAGCGAGTACTTCACTACAAGACCACTTCCCTCAGACCCCTCTACTTTGCCGAAGTACCCACCAAGCAAGGAGTTTGATGTCAAGCTTCGGGATGAGGAAGCTCGAAGAAGAAGAGCTCCTAACAGTGCTGCACGTGAACATGAAGCAGCTCGAAAGATTCCCAGAGAATCTAAAGCGATTCCTGCACCAGATGCGAATGCTGAACTGCTGGCATCTATACAGAAGAAACAAGGGAAGCAGAATAATACAAGTGTCAGTGAGAATTACAATCCTGAAGAGGATGGAGGATCTGGCTTTCGAATCGAGCCCCCCAAAGAAGCAACCCAAACTCAACCTAATGCTTTGGGTCCTTCACGACACTTGAATGGGAATCAGGGTGATACTCTGAAAGGTTCTTCAGTTGAGGCAAAAGGTGCACAACTTCGAAAACAAAGATCTTATATGCACATTGGAGTTCGAGGTGGTTCACAATTTGGATGTGGTGGAGAAAGTAGTGCTAATTCGCATTGGCAAGAAGAGTGTTTTAATGTGTCATATAACCATTTCAATGGTGGTGAATCTTCAGACAAGAATGAATGGTCTCACCATTTACTAGACAGGCCAAAGTCTGCATATAAGATAGATGATCAGCCATCTGGAAAAGAGTGTGCTATGAATTACGCTCCGAAAAAGAGAATTCACTATTCAGGACCATTGATGCCTCCTGGAGGAAACCTTGAGGAAATGTTAAAAGAGCATGAGAAACAAATCCAGCATGCAGTACGCAAGGCCCGTATCGACAAAGGTAAGACTAAAAAGACGTATGGCGATAAAGGTCTATCAGAATCGTTGCTTCACCATGTAAGAAATGGGAATTGA | 2028 | 44.38 | MGCICSKRIPPNDYVAENHSKHRHFKSNTSLGASLRKQDGGQCDGMARLISNQPGEESDDGAKRLRMHPTIINVVNGQNGGLVIAGWPSWLTSVAGEAINGWIPRKADSFQKLDKIGQGTYSSVYRARDIETNKIVALKKVRFANMDPESVRFMAREILILRRLDHPNVMKLEGLITSRVSGSLYLIFEYMEHDLAGLAATPGIKFTESQIKCYMQQLLWGLEHCHAQGVLHRDIKGSNLLIDNNGNLKIGDFGLSTFFRSRQKQPLTSRVVTLWYRPPELLLGATDYGVSVDLWSAGCILSELYAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQHPYKRCVAETFKDFPSSALALLDILLAVEPDGRGTASSALQSEYFTTRPLPSDPSTLPKYPPSKEFDVKLRDEEARRRRAPNSAAREHEAARKIPRESKAIPAPDANAELLASIQKKQGKQNNTSVSENYNPEEDGGSGFRIEPPKEATQTQPNALGPSRHLNGNQGDTLKGSSVEAKGAQLRKQRSYMHIGVRGGSQFGCGGESSANSHWQEECFNVSYNHFNGGESSDKNEWSHHLLDRPKSAYKIDDQPSGKECAMNYAPKKRIHYSGPLMPPGGNLEEMLKEHEKQIQHAVRKARIDKGKTKKTYGDKGLSESLLHHVRNGN | 675 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 4187800 | 4216890 | - | Sed0016678.1 | Sed02g0027 | 703695 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed02g0027 | 675 | MobiDBLite | consensus disorder prediction | 465 | 481 | - | - | |
Sed02g0027 | 675 | PANTHER | CELL DIVISION PROTEIN KINASE | 109 | 394 | IPR050108 | GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER) | |
Sed02g0027 | 675 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 230 | 242 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed02g0027 | 675 | Coils | Coil | 626 | 646 | - | - | |
Sed02g0027 | 675 | ProSitePatterns | Protein kinases ATP-binding region signature. | 116 | 139 | IPR017441 | GO:0005524(InterPro) | |
Sed02g0027 | 675 | SMART | serkin_6 | 110 | 394 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed02g0027 | 675 | Gene3D | Phosphorylase Kinase; domain 1 | 97 | 192 | - | - | |
Sed02g0027 | 675 | ProSiteProfiles | Protein kinase domain profile. | 110 | 394 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed02g0027 | 675 | MobiDBLite | consensus disorder prediction | 413 | 448 | - | - | |
Sed02g0027 | 675 | FunFam | probable serine/threonine-protein kinase At1g54610 | 193 | 434 | - | - | |
Sed02g0027 | 675 | MobiDBLite | consensus disorder prediction | 648 | 675 | - | - | |
Sed02g0027 | 675 | MobiDBLite | consensus disorder prediction | 648 | 667 | - | - | |
Sed02g0027 | 675 | MobiDBLite | consensus disorder prediction | 494 | 521 | - | - | |
Sed02g0027 | 675 | MobiDBLite | consensus disorder prediction | 465 | 523 | - | - | |
Sed02g0027 | 675 | MobiDBLite | consensus disorder prediction | 393 | 452 | - | - | |
Sed02g0027 | 675 | FunFam | probable serine/threonine-protein kinase At1g54610 | 97 | 192 | - | - | |
Sed02g0027 | 675 | Pfam | Protein kinase domain | 110 | 394 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed02g0027 | 675 | SUPERFAMILY | Protein kinase-like (PK-like) | 104 | 401 | IPR011009 | - | |
Sed02g0027 | 675 | CDD | STKc_CDK9_like | 110 | 394 | - | - | |
Sed02g0027 | 675 | Gene3D | Transferase(Phosphotransferase) domain 1 | 193 | 434 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g0027 | Sed-Chr2:4187800 | Sed10g1594 | Sed-Chr10:32478506 | 3.20E-187 | dispersed | |
Sed02g0027 | Sed-Chr2:4187800 | Sed04g1587 | Sed-Chr4:30652697 | 5.60E-192 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78764 | PF00069 | Pkinase | 1.50E-67 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed02g0027 | - | - | - | 0.0 |