Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0028 ATGTTTCAATGCATAGCATGTACCAACCAGAAAGACGACGGGGGGGAGGACGGGGCTACGCGTGGGACCCCCGCGGCGCCCACTACAAAGGAAGCCGTCAAAAGCCTCACAACGCAGATTAAGGACATGGCTTTGAAATTCTCTGGGGCTTATAAGCAGTGCAAACCTTGCACAGGCTCCAGTAGCTACAAGAAAGGACAGAGACCTTACCCAGATTTTGACACGGCTTCAGAAGGGGTTCCATACCCGTACATAGGAGGGGCAAGTGCAAGTTCAACCCCTGCCTGGGACTTCCCTCCCGTGAATCGGCACCCGCATACGAGATCCGACTCGAGATTCAAAGGGGTGTTCAGAGGAGACCAGACCCCTGGGGCCGATTCCACCATATCAGCATGTGATGTGGTGCTTGAGGATGAGCAGAAAGAGTGGATGGCACAGGTGGAGCCTGGTGTTCACATTACTTTTGTGTCCCTACCCAATGGGGGCAATGATTTAAAGCGAATTCGTTTCGATCGAGAAATGTTCAACAAATGGCAAGCTCAGCGATGGTGGGGCGAGAACTATGACAGAATAACGGAGCTCTATAATGTTCAGAGATTCAACCAACAAGCTCTTCATACGCCACCAAGAACGGAGGAAGAGAGGGATTCTTCTTACTCAAAGATGGGAAGAGATAGTCCAATGACTTCGGCGCCGAAAAACTACAAACCTTCTGGAAGTAAAGGTTATTTTCCATCTGACCAGCACTTTGATCATGGAAGTGGCCATCCCTATGCAGGGTCAAGTGCCTATCCAGCAGGCGGCGCAAAAGGCGACATACCTTCTATGGAAGCATCACGCACAACTACCTCTTCGAGAGACGAACCTTCGATTTCCATTAGCAATGCAAGCGACATCGAGGCGGAATGGGTAGAGGAAGATGAACCAGGGGTCTATATAACAATCAGGCAGCTTGTTGATGGTACTAGAGAGCTTCGTCGTGTCAGATTCAGCCGTGAAAGATTTGGGGAGATGAACGCGAAGCAATGGTGGGAACATAACAGAGAGAGAATCCAAGCTCAATACCTATAA 1071 49.95 MFQCIACTNQKDDGGEDGATRGTPAAPTTKEAVKSLTTQIKDMALKFSGAYKQCKPCTGSSSYKKGQRPYPDFDTASEGVPYPYIGGASASSTPAWDFPPVNRHPHTRSDSRFKGVFRGDQTPGADSTISACDVVLEDEQKEWMAQVEPGVHITFVSLPNGGNDLKRIRFDREMFNKWQAQRWWGENYDRITELYNVQRFNQQALHTPPRTEEERDSSYSKMGRDSPMTSAPKNYKPSGSKGYFPSDQHFDHGSGHPYAGSSAYPAGGAKGDIPSMEASRTTTSSRDEPSISISNASDIEAEWVEEDEPGVYITIRQLVDGTRELRRVRFSRERFGEMNAKQWWEHNRERIQAQYL 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4416114 4420673 - Sed0021466.1 Sed02g0028 703696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0028 356 Pfam Transcription factor BRX N-terminal domain 27 57 IPR027988 -
Sed02g0028 356 Pfam Transcription factor regulating root and shoot growth via Pin3 300 355 IPR013591 -
Sed02g0028 356 Pfam Transcription factor regulating root and shoot growth via Pin3 141 195 IPR013591 -
Sed02g0028 356 MobiDBLite consensus disorder prediction 222 236 - -
Sed02g0028 356 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 356 IPR044532 -
Sed02g0028 356 MobiDBLite consensus disorder prediction 276 294 - -
Sed02g0028 356 ProSiteProfiles BRX domain profile. 141 196 IPR013591 -
Sed02g0028 356 MobiDBLite consensus disorder prediction 12 31 - -
Sed02g0028 356 ProSiteProfiles BRX domain profile. 301 356 IPR013591 -
Sed02g0028 356 MobiDBLite consensus disorder prediction 97 124 - -
Sed02g0028 356 MobiDBLite consensus disorder prediction 202 294 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0028 Sed-Chr2:4416114 Sed02g0030 Sed-Chr2:4416114 7.80E-185 dispersed
Sed02g0028 Sed-Chr2:4416114 Sed02g0029 Sed-Chr2:4416114 1.40E-210 tandem
Sed02g0028 Sed-Chr2:4416114 Sed04g0896 Sed-Chr4:8084261 2.50E-183 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0028 - - - 0.0