Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0029 ATGGTTTCCCCTCTATTCTATTATTTCACTGTTTGTTTATGCAATTTGCTTGATTCCCTTTTTTGTTGTTTCATAAATGTAGTATCCACGTACGGAAGGCCTAGCCTAGGTGTTTGTAGCAAAATGTTTCAATGCATAGCATGTACCAACCAGAAAGACGACGGGGGGGAGGACGGGGCTACGCGTGGGACCCCCGCGGCGCCCACTACAAAGGAAGCCGTCAAAAGCCTCACAACGCAGATTAAGGACATGGCTTTGAAATTCTCTGGGGCTTATAAGCAGTGCAAACCTTGCACAGGCTCCAGTAGCTACAAGAAAGGACAGAGACCTTACCCAGATTTTGACACGGCTTCAGAAGGGGTTCCATACCCGTACATAGGAGGGGCAAGTGCAAGTTCAACCCCTGCCTGGGACTTCCCTCCCGTGAATCGGCACCCGCATACGAGATCCGACTCGAGATTCAAAGGGGTGTTCAGAGGAGACCAGACCCCTGGGGCCGATTCCACCATATCAGCATGTGATGTGGTGCTTGAGGATGAGCAGAAAGAGTGGATGGCACAGGTGGAGCCTGGTGTTCACATTACTTTTGTGTCCCTACCCAATGGGGGCAATGATTTAAAGCGAATTCGTTTCGATCGAGAAATGTTCAACAAATGGCAAGCTCAGCGATGGTGGGGCGAGAACTATGACAGAATAACGGAGCTCTATAATGTTCAGAGATTCAACCAACAAGCTCTTCATACGCCACCAAGAACGGAGGAAGAGAGGGATTCTTCTTACTCAAAGATGGGAAGAGATAGTCCAATGACTTCGGCGCCGAAAAACTACAAACCTTCTGGAAGTAAAGGTTATTTTCCATCTGACCAGCACTTTGATCATGGAAGTGGCCATCCCTATGCAGGGTCAAGTGCCTATCCAGCAGGCGGCGCAAAAGGCGACATACCTTCTATGGAAGCATCACGCACAACTACCTCTTCGAGAGACGAACCTTCGATTTCCATTAGCAATGCAAGCGACATCGAGGCGGAATGGGTAGAGGAAGATGAACCAGGGGTCTATATAACAATCAGGCAGCTTGTTGATGGTACTAGAGAGCTTCGTCGTGTCAGATTCAGCCGTGAAAGATTTGGGGAGATGAACGCGAAGCAATGGTGGGAACATAACAGAGAGAGAATCCAAGCTCAATACCTATAA 1194 48.58 MVSPLFYYFTVCLCNLLDSLFCCFINVVSTYGRPSLGVCSKMFQCIACTNQKDDGGEDGATRGTPAAPTTKEAVKSLTTQIKDMALKFSGAYKQCKPCTGSSSYKKGQRPYPDFDTASEGVPYPYIGGASASSTPAWDFPPVNRHPHTRSDSRFKGVFRGDQTPGADSTISACDVVLEDEQKEWMAQVEPGVHITFVSLPNGGNDLKRIRFDREMFNKWQAQRWWGENYDRITELYNVQRFNQQALHTPPRTEEERDSSYSKMGRDSPMTSAPKNYKPSGSKGYFPSDQHFDHGSGHPYAGSSAYPAGGAKGDIPSMEASRTTTSSRDEPSISISNASDIEAEWVEEDEPGVYITIRQLVDGTRELRRVRFSRERFGEMNAKQWWEHNRERIQAQYL 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4416114 4419962 - Sed0021466.2 Sed02g0029 703697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0029 397 Pfam Transcription factor regulating root and shoot growth via Pin3 182 236 IPR013591 -
Sed02g0029 397 Pfam Transcription factor regulating root and shoot growth via Pin3 341 396 IPR013591 -
Sed02g0029 397 MobiDBLite consensus disorder prediction 243 335 - -
Sed02g0029 397 ProSiteProfiles BRX domain profile. 342 397 IPR013591 -
Sed02g0029 397 ProSiteProfiles BRX domain profile. 182 237 IPR013591 -
Sed02g0029 397 MobiDBLite consensus disorder prediction 138 165 - -
Sed02g0029 397 PANTHER PROTEIN BREVIS RADIX-LIKE 1 42 397 IPR044532 -
Sed02g0029 397 MobiDBLite consensus disorder prediction 317 335 - -
Sed02g0029 397 Pfam Transcription factor BRX N-terminal domain 68 98 IPR027988 -
Sed02g0029 397 MobiDBLite consensus disorder prediction 263 277 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0029 Sed-Chr2:4416114 Sed04g0896 Sed-Chr4:8084261 3.70E-183 dispersed
Sed02g0028 Sed-Chr2:4416114 Sed02g0029 Sed-Chr2:4416114 1.40E-210 tandem
Sed02g0029 Sed-Chr2:4416114 Sed02g0030 Sed-Chr2:4416114 8.70E-185 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0029 - - - 0.0