Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0030 ATGGCTTTGAAATTCTCTGGGGCTTATAAGCAGTGCAAACCTTGCACAGGCTCCAGTAGCTACAAGAAAGGACAGAGACCTTACCCAGATTTTGACACGGCTTCAGAAGGGGTTCCATACCCGTACATAGGAGGGGCAAGTGCAAGTTCAACCCCTGCCTGGGACTTCCCTCCCGTGAATCGGCACCCGCATACGAGATCCGACTCGAGATTCAAAGGGGTGTTCAGAGGAGACCAGACCCCTGGGGCCGATTCCACCATATCAGCATGTGATGTGGTGCTTGAGGATGAGCAGAAAGAGTGGATGGCACAGGTGGAGCCTGGTGTTCACATTACTTTTGTGTCCCTACCCAATGGGGGCAATGATTTAAAGCGAATTCGTTTCGATCGAGAAATGTTCAACAAATGGCAAGCTCAGCGATGGTGGGGCGAGAACTATGACAGAATAACGGAGCTCTATAATGTTCAGAGATTCAACCAACAAGCTCTTCATACGCCACCAAGAACGGAGGAAGAGAGGGATTCTTCTTACTCAAAGATGGGAAGAGATAGTCCAATGACTTCGGCGCCGAAAAACTACAAACCTTCTGGAAGTAAAGGTTATTTTCCATCTGACCAGCACTTTGATCATGGAAGTGGCCATCCCTATGCAGGGTCAAGTGCCTATCCAGCAGGCGGCGCAAAAGGCGACATACCTTCTATGGAAGCATCACGCACAACTACCTCTTCGAGAGACGAACCTTCGATTTCCATTAGCAATGCAAGCGACATCGAGGCGGAATGGGTAGAGGAAGATGAACCAGGGGTCTATATAACAATCAGGCAGCTTGTTGATGGTACTAGAGAGCTTCGTCGTGTCAGATTCAGCCGTGAAAGATTTGGGGAGATGAACGCGAAGCAATGGTGGGAACATAACAGAGAGAGAATCCAAGCTCAATACCTATAA 945 48.89 MALKFSGAYKQCKPCTGSSSYKKGQRPYPDFDTASEGVPYPYIGGASASSTPAWDFPPVNRHPHTRSDSRFKGVFRGDQTPGADSTISACDVVLEDEQKEWMAQVEPGVHITFVSLPNGGNDLKRIRFDREMFNKWQAQRWWGENYDRITELYNVQRFNQQALHTPPRTEEERDSSYSKMGRDSPMTSAPKNYKPSGSKGYFPSDQHFDHGSGHPYAGSSAYPAGGAKGDIPSMEASRTTTSSRDEPSISISNASDIEAEWVEEDEPGVYITIRQLVDGTRELRRVRFSRERFGEMNAKQWWEHNRERIQAQYL 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4416114 4418496 - Sed0021466.3 Sed02g0030 703698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0030 314 MobiDBLite consensus disorder prediction 180 194 - -
Sed02g0030 314 ProSiteProfiles BRX domain profile. 259 314 IPR013591 -
Sed02g0030 314 MobiDBLite consensus disorder prediction 1 33 - -
Sed02g0030 314 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 314 IPR044532 -
Sed02g0030 314 MobiDBLite consensus disorder prediction 234 252 - -
Sed02g0030 314 MobiDBLite consensus disorder prediction 160 252 - -
Sed02g0030 314 ProSiteProfiles BRX domain profile. 99 154 IPR013591 -
Sed02g0030 314 Pfam Transcription factor regulating root and shoot growth via Pin3 99 153 IPR013591 -
Sed02g0030 314 Pfam Transcription factor regulating root and shoot growth via Pin3 258 313 IPR013591 -
Sed02g0030 314 MobiDBLite consensus disorder prediction 55 82 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0028 Sed-Chr2:4416114 Sed02g0030 Sed-Chr2:4416114 7.80E-185 dispersed
Sed02g0030 Sed-Chr2:4416114 Sed04g0896 Sed-Chr4:8084261 1.40E-164 dispersed
Sed02g0029 Sed-Chr2:4416114 Sed02g0030 Sed-Chr2:4416114 8.70E-185 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0030 - - - 0.0