Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed02g0056 | ATGAGTAGCGCTGACATGGACAAACCCCCTAAAGCCAAGGACGCCAACACTCCGCCTCCTACTTCCCAGGAGCAGCCTCCCACCGCAAGTGCTGCCGCAGTGAATCCTGATTGGTGGGGCTATCAGGCATATTCTCCCATGCCTCCACATGCTTTCTTGGCATCAAGCCCCCAAGCCCCCCACCCCTATGTCTGGGGACTTCAGGTACACACTGCTTTCTTAGTTGTAATTGATGCCATGCATATTTATCTAAACGTGGGTTTTCAATTACAACATATTATGTCTCCTTATGGCACACCTCCACATCCATATGTTACAATCTATCCCCCTGGTGGCATATATGCTCATCCTTCTATTCCTCCGGGATCGTATCCTTTTAGCCCATTTGCAATGCCCTCTCCAAATGGCATCACTGAGGCCTCTGGTAATACCGCAGGCAGCTTAGATGGGGAAATTAAGCCACCCGAAGTGAAAGAAAAGTTGCCAAGTAAAAGATCAAAAGGAAGTTTAGGCAGTTTGAACATGATTATAGGGAAGAACAATGAGCTCGGAAAAACATCTGGAACATCTGCCAATGGAGCATACTCTAAAAGGGCTAGTTCGGTGGTAGTCGATGGACTACAAGCGAAAGGATGCTCGAGAGGAGCCGGAGAATCACAGCCCAAGTTAGGTTCCAGGCAAGACAGTTTGGAAGTTGACGCATCTCAGAATGGTAACTCTATGCATGGTACTCAAAATGGAGGATCTAATACTCAGGCAATGGCTGTCATTCCATTGGCAGCTGTTGGAGCCCTGGGAGTCGTTCCTGGTCCCACAACCAACTTAAATATTGGAATGGACTATTGGGGTGCATCACCCACTGTCCCTGCAATCCGCAGAAAGGTTCCATCCACACCAGTTGCTGGAGGATTACTTGGATCTCGGGATAGCGTACAGTCACAGCTTTGGTTGCAGGATGAAAGAGAGCTTAAAAGACAGAGAAGAAAGCAATCAAACAGGGAATCTGCTCGAAGATCTCGGTTACGCAAGCAGGTAGAATGTGACGAACTAGCACACCGAGCTGAAGCCTTACAACAAGAAAATGCGAGTCTTAGGTCTGAGGTGAACCGGATAAGGAATAACTTGCCCCATCTAATATGCTGGACTTTGTTTATGCAGGAAAGACTAGGCGAAGTTCCAGGAAATGGAAATGCAAGGGCTAGCAGCAGGACGGCCAGCTCAGAAGTTGTGCAAGTTGTTAACAAGAATTCAATGTTCCCTCCCTACTTGCCGTGCTGCATTTTTAGGCGCATCACCTAA | 1299 | 47.88 | MSSADMDKPPKAKDANTPPPTSQEQPPTASAAAVNPDWWGYQAYSPMPPHAFLASSPQAPHPYVWGLQVHTAFLVVIDAMHIYLNVGFQLQHIMSPYGTPPHPYVTIYPPGGIYAHPSIPPGSYPFSPFAMPSPNGITEASGNTAGSLDGEIKPPEVKEKLPSKRSKGSLGSLNMIIGKNNELGKTSGTSANGAYSKRASSVVVDGLQAKGCSRGAGESQPKLGSRQDSLEVDASQNGNSMHGTQNGGSNTQAMAVIPLAAVGALGVVPGPTTNLNIGMDYWGASPTVPAIRRKVPSTPVAGGLLGSRDSVQSQLWLQDERELKRQRRKQSNRESARRSRLRKQVECDELAHRAEALQQENASLRSEVNRIRNNLPHLICWTLFMQERLGEVPGNGNARASSRTASSEVVQVVNKNSMFPPYLPCCIFRRIT | 432 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 5490427 | 5515800 | + | Sed0005581.1 | Sed02g0056 | 703724 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed02g0056 | 432 | MobiDBLite | consensus disorder prediction | 142 | 172 | - | - | |
Sed02g0056 | 432 | SUPERFAMILY | Leucine zipper domain | 323 | 379 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed02g0056 | 432 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 322 | 378 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed02g0056 | 432 | Pfam | Disordered region downstream of MFMR | 159 | 285 | - | - | |
Sed02g0056 | 432 | Pfam | bZIP transcription factor | 320 | 374 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed02g0056 | 432 | MobiDBLite | consensus disorder prediction | 324 | 343 | - | - | |
Sed02g0056 | 432 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 327 | 342 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed02g0056 | 432 | PANTHER | G-BOX-BINDING FACTOR 3-RELATED | 23 | 374 | IPR044827 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0043565(InterPro)|GO:0043565(PANTHER) | |
Sed02g0056 | 432 | MobiDBLite | consensus disorder prediction | 211 | 250 | - | - | |
Sed02g0056 | 432 | Coils | Coil | 340 | 374 | - | - | |
Sed02g0056 | 432 | Pfam | G-box binding protein MFMR | 90 | 120 | IPR012900 | - | |
Sed02g0056 | 432 | Pfam | G-box binding protein MFMR | 1 | 68 | IPR012900 | - | |
Sed02g0056 | 432 | Gene3D | - | 323 | 376 | - | - | |
Sed02g0056 | 432 | MobiDBLite | consensus disorder prediction | 220 | 250 | - | - | |
Sed02g0056 | 432 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Sed02g0056 | 432 | CDD | bZIP_plant_GBF1 | 325 | 372 | IPR045314 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed02g0056 | 432 | SMART | brlzneu | 320 | 386 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g0056 | Sed-Chr2:5490427 | Sed05g0253 | Sed-Chr5:1493170 | 4.70E-91 | dispersed | |
Sed02g0111 | Sed-Chr2:22194879 | Sed02g0056 | Sed-Chr2:5490427 | 1.00E-133 | transposed | |
Sed02g0056 | Sed-Chr2:5490427 | Sed04g0881 | Sed-Chr4:7920364 | 4.50E-134 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37477 | PF16596 | MFMR_assoc | 4.60E-35 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed02g0056 | K09060 | - | csv:101206627 | 582.793 |