Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0056 ATGAGTAGCGCTGACATGGACAAACCCCCTAAAGCCAAGGACGCCAACACTCCGCCTCCTACTTCCCAGGAGCAGCCTCCCACCGCAAGTGCTGCCGCAGTGAATCCTGATTGGTGGGGCTATCAGGCATATTCTCCCATGCCTCCACATGCTTTCTTGGCATCAAGCCCCCAAGCCCCCCACCCCTATGTCTGGGGACTTCAGGTACACACTGCTTTCTTAGTTGTAATTGATGCCATGCATATTTATCTAAACGTGGGTTTTCAATTACAACATATTATGTCTCCTTATGGCACACCTCCACATCCATATGTTACAATCTATCCCCCTGGTGGCATATATGCTCATCCTTCTATTCCTCCGGGATCGTATCCTTTTAGCCCATTTGCAATGCCCTCTCCAAATGGCATCACTGAGGCCTCTGGTAATACCGCAGGCAGCTTAGATGGGGAAATTAAGCCACCCGAAGTGAAAGAAAAGTTGCCAAGTAAAAGATCAAAAGGAAGTTTAGGCAGTTTGAACATGATTATAGGGAAGAACAATGAGCTCGGAAAAACATCTGGAACATCTGCCAATGGAGCATACTCTAAAAGGGCTAGTTCGGTGGTAGTCGATGGACTACAAGCGAAAGGATGCTCGAGAGGAGCCGGAGAATCACAGCCCAAGTTAGGTTCCAGGCAAGACAGTTTGGAAGTTGACGCATCTCAGAATGGTAACTCTATGCATGGTACTCAAAATGGAGGATCTAATACTCAGGCAATGGCTGTCATTCCATTGGCAGCTGTTGGAGCCCTGGGAGTCGTTCCTGGTCCCACAACCAACTTAAATATTGGAATGGACTATTGGGGTGCATCACCCACTGTCCCTGCAATCCGCAGAAAGGTTCCATCCACACCAGTTGCTGGAGGATTACTTGGATCTCGGGATAGCGTACAGTCACAGCTTTGGTTGCAGGATGAAAGAGAGCTTAAAAGACAGAGAAGAAAGCAATCAAACAGGGAATCTGCTCGAAGATCTCGGTTACGCAAGCAGGTAGAATGTGACGAACTAGCACACCGAGCTGAAGCCTTACAACAAGAAAATGCGAGTCTTAGGTCTGAGGTGAACCGGATAAGGAATAACTTGCCCCATCTAATATGCTGGACTTTGTTTATGCAGGAAAGACTAGGCGAAGTTCCAGGAAATGGAAATGCAAGGGCTAGCAGCAGGACGGCCAGCTCAGAAGTTGTGCAAGTTGTTAACAAGAATTCAATGTTCCCTCCCTACTTGCCGTGCTGCATTTTTAGGCGCATCACCTAA 1299 47.88 MSSADMDKPPKAKDANTPPPTSQEQPPTASAAAVNPDWWGYQAYSPMPPHAFLASSPQAPHPYVWGLQVHTAFLVVIDAMHIYLNVGFQLQHIMSPYGTPPHPYVTIYPPGGIYAHPSIPPGSYPFSPFAMPSPNGITEASGNTAGSLDGEIKPPEVKEKLPSKRSKGSLGSLNMIIGKNNELGKTSGTSANGAYSKRASSVVVDGLQAKGCSRGAGESQPKLGSRQDSLEVDASQNGNSMHGTQNGGSNTQAMAVIPLAAVGALGVVPGPTTNLNIGMDYWGASPTVPAIRRKVPSTPVAGGLLGSRDSVQSQLWLQDERELKRQRRKQSNRESARRSRLRKQVECDELAHRAEALQQENASLRSEVNRIRNNLPHLICWTLFMQERLGEVPGNGNARASSRTASSEVVQVVNKNSMFPPYLPCCIFRRIT 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5490427 5515800 + Sed0005581.1 Sed02g0056 703724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0056 432 MobiDBLite consensus disorder prediction 142 172 - -
Sed02g0056 432 SUPERFAMILY Leucine zipper domain 323 379 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed02g0056 432 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 322 378 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed02g0056 432 Pfam Disordered region downstream of MFMR 159 285 - -
Sed02g0056 432 Pfam bZIP transcription factor 320 374 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed02g0056 432 MobiDBLite consensus disorder prediction 324 343 - -
Sed02g0056 432 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 327 342 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed02g0056 432 PANTHER G-BOX-BINDING FACTOR 3-RELATED 23 374 IPR044827 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0043565(InterPro)|GO:0043565(PANTHER)
Sed02g0056 432 MobiDBLite consensus disorder prediction 211 250 - -
Sed02g0056 432 Coils Coil 340 374 - -
Sed02g0056 432 Pfam G-box binding protein MFMR 90 120 IPR012900 -
Sed02g0056 432 Pfam G-box binding protein MFMR 1 68 IPR012900 -
Sed02g0056 432 Gene3D - 323 376 - -
Sed02g0056 432 MobiDBLite consensus disorder prediction 220 250 - -
Sed02g0056 432 MobiDBLite consensus disorder prediction 1 32 - -
Sed02g0056 432 CDD bZIP_plant_GBF1 325 372 IPR045314 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed02g0056 432 SMART brlzneu 320 386 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0056 Sed-Chr2:5490427 Sed05g0253 Sed-Chr5:1493170 4.70E-91 dispersed
Sed02g0111 Sed-Chr2:22194879 Sed02g0056 Sed-Chr2:5490427 1.00E-133 transposed
Sed02g0056 Sed-Chr2:5490427 Sed04g0881 Sed-Chr4:7920364 4.50E-134 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37477 PF16596 MFMR_assoc 4.60E-35 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0056 K09060 - csv:101206627 582.793