Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0066 ATGTTCCAGCACCTCTTCAAAATAAATCATCATTCCGTTTTCTCTCTCCTCCATCATCGTCTTTCCCTCTCTAAAAAGTTGAATTGCTTTCCCCTCTTGGTTTCAATTTCCCCTAAGTCTGTATATCATCATTTGGGGATTTCTCTCCTTTCTTTCTTCTTGCTCGGAAAAGCTTGGATCCCGGCGGCGACCGACATGAGCTTCCAGGATATCGAGGCCGGTCGCCCCTTCGCGTCTTCCAGAAGAGACCTCGTCAATGGCAGACAGGATCCCACCCAAGCCGTCGCCTCCGGTATTTTTCAGATCAATACTGCCGTCGCTACCTTCCACAGGCTGGTTAACACCTTAGGAACGCCCAAGGATACTCCCGACCTACGCGACAAGCTGCACAAGACCAGGTTACATATTGGACAGTTGGTTAAAGATACCTCTGCTAAACTTAAACAGGCCAGTGATATTGATCATCACGCTGAAGTTAATGCCAGTAAGAAAATTGCAGATGCTAAACTTGCTAAAGATTTTCGAGCTGTGTTGAAGGAATTTCAGAAGGCTCAGCGACTTGCAGCTGAGAGGGAGACAGCATATACACCTTTTGTTCCACAGGCTGCTTTCCCTTCTAGCTACACAGCCAGTGAGTCGGATGCAAGCTCAGAAAAGAATTTTGAACAGCGTGCCCTTCTTGTGGAATCCAGGAGACAAGAGGTCTTGCTGTTGGACAATGAAATAGCATTCAATGAGGCAATAATTGAGGAAAGAGAGCAAGGTATTCATGAAATCCAGCAGCAGATTGGAGAAGTGAATGAAATTTTTAAAGATCTTGCGGTTCTAGTCCACGAACAGGGAACCATGATTGATGATATTGGATCCAACATCGAGAGCTCCCATGCTGCAACATCACAGGGAACGACTCAGCTTATAAAAGCTTCAAAGACACAAAGATCAAATTCATCTCTGGCTTGCTTACTTTTGGTGATATTTGGTATTATCCTTCTAATTGTGATCATAATAGTTGTTGCTTAA 1020 44.61 MFQHLFKINHHSVFSLLHHRLSLSKKLNCFPLLVSISPKSVYHHLGISLLSFFLLGKAWIPAATDMSFQDIEAGRPFASSRRDLVNGRQDPTQAVASGIFQINTAVATFHRLVNTLGTPKDTPDLRDKLHKTRLHIGQLVKDTSAKLKQASDIDHHAEVNASKKIADAKLAKDFRAVLKEFQKAQRLAAERETAYTPFVPQAAFPSSYTASESDASSEKNFEQRALLVESRRQEVLLLDNEIAFNEAIIEEREQGIHEIQQQIGEVNEIFKDLAVLVHEQGTMIDDIGSNIESSHAATSQGTTQLIKASKTQRSNSSLACLLLVIFGIILLIVIIIVVA 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8250840 8254454 - Sed0001604.1 Sed02g0066 703734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0066 339 Pfam SNARE domain 282 334 IPR000727 -
Sed02g0066 339 SMART tSNARE_6 241 308 IPR000727 -
Sed02g0066 339 FunFam Syntaxin-22 like 86 199 - -
Sed02g0066 339 Pfam Syntaxin-like protein 95 195 IPR006011 GO:0016020(InterPro)
Sed02g0066 339 ProSitePatterns Syntaxin / epimorphin family signature. 252 291 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Sed02g0066 339 CDD SNARE_Qa 249 307 - -
Sed02g0066 339 CDD SynN 87 225 IPR006011 GO:0016020(InterPro)
Sed02g0066 339 SUPERFAMILY t-snare proteins 89 301 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Sed02g0066 339 Gene3D - 239 339 - -
Sed02g0066 339 Gene3D - 86 199 - -
Sed02g0066 339 FunFam Syntaxin-22 like 239 339 - -
Sed02g0066 339 PANTHER SYNTAXIN 100 329 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Sed02g0066 339 SMART SynN_4 80 193 IPR006011 GO:0016020(InterPro)
Sed02g0066 339 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 246 308 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0066 Sed-Chr2:8250840 Sed02g0067 Sed-Chr2:8250840 5.50E-172 tandem
Sed02g0066 Sed-Chr2:8250840 Sed04g0861 Sed-Chr4:7468115 8.40E-128 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0066 - - - 0.0