Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0067 ATGTTCCAGCACCTCTTCAAAATAAATCATCATTCCGTTTTCTCTCTCCTCCATCATCGTCTTTCCCTCTCTAAAAAGTTGAATTGCTTTCCCCTCTTGGTTTCAATTTCCCCTAAGTCTGTATATCATCATTTGGGGATTTCTCTCCTTTCTTTCTTCTTGCTCGGAAAAGCTTGGATCCCGGCGGCGACCGACATGAGCTTCCAGGATATCGAGGCCGGTCGCCCCTTCGCGTCTTCCAGAAGAGACCTCGTCAATGGCAGACAGGATCCCACCCAAGCCGTCGCCTCCGGTATTTTTCAGATCAATACTGCCGTCGCTACCTTCCACAGGCTGGTTAACACCTTAGGAACGCCCAAGGATACTCCCGACCTACGCGACAAGCTGCACAAGACCAGGTTACATATTGGACAGTTGGTTAAAGATACCTCTGCTAAACTTAAACAGGCCAGTGATATTGATCATCACGCTGAAGTTAATGCCAGTAAGAAAATTGCAGATGCTAAACTTGCTAAAGATTTTCGAGCTGTGTTGAAGGAATTTCAGAAGGCTCAGCGACTTGCAGCTGAGAGGGAGACAGCATATACACCTTTTGTTCCACAGGCTGCTTTCCCTTCTAGCTACACAGCCAGTGAGTCGGATGCAAGCTCAGAAAAGAATTTTGAACAGCGTGCCCTTCTTGTGGAATCCAGGAGACAAGAGGTCTTGCTGTTGGACAATGAAATAGCATTCAATGAGGCAATAATTGAGGAAAGAGAGCAAGGTATTCATGAAATCCAGCAGCAGATTGGAGAAGTGAATGAAATTTTTAAAGATCTTGCGGTTCTAGTCCACGAACAGGGAACCATGATTGATGATATTGGATCCAACATCGAGAGCTCCCATGCTGCAACATCACAGGGAACGACTCAGCTTATAAAAGCTTCAAAGACACAAAGATCAAATTCATCTCTGGTGAGCCGTTGTGATTCCCTATATTCTTCAGCAGGTTCTATGTAG 999 45.55 MFQHLFKINHHSVFSLLHHRLSLSKKLNCFPLLVSISPKSVYHHLGISLLSFFLLGKAWIPAATDMSFQDIEAGRPFASSRRDLVNGRQDPTQAVASGIFQINTAVATFHRLVNTLGTPKDTPDLRDKLHKTRLHIGQLVKDTSAKLKQASDIDHHAEVNASKKIADAKLAKDFRAVLKEFQKAQRLAAERETAYTPFVPQAAFPSSYTASESDASSEKNFEQRALLVESRRQEVLLLDNEIAFNEAIIEEREQGIHEIQQQIGEVNEIFKDLAVLVHEQGTMIDDIGSNIESSHAATSQGTTQLIKASKTQRSNSSLVSRCDSLYSSAGSM 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8250840 8254454 - Sed0001604.2 Sed02g0067 703735

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0067 332 Gene3D - 250 317 - -
Sed02g0067 332 FunFam Syntaxin-22 like 239 326 - -
Sed02g0067 332 SMART tSNARE_6 241 308 IPR000727 -
Sed02g0067 332 FunFam Syntaxin-22 like 86 199 - -
Sed02g0067 332 ProSitePatterns Syntaxin / epimorphin family signature. 252 291 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Sed02g0067 332 PANTHER SYNTAXIN 100 315 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Sed02g0067 332 Pfam Syntaxin-like protein 95 195 IPR006011 GO:0016020(InterPro)
Sed02g0067 332 SUPERFAMILY t-snare proteins 89 301 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Sed02g0067 332 CDD SNARE_Qa 249 307 - -
Sed02g0067 332 CDD SynN 87 225 IPR006011 GO:0016020(InterPro)
Sed02g0067 332 Pfam SNARE domain 282 318 IPR000727 -
Sed02g0067 332 SMART SynN_4 80 193 IPR006011 GO:0016020(InterPro)
Sed02g0067 332 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 246 308 IPR000727 -
Sed02g0067 332 Gene3D - 86 199 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0067 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0067 Sed-Chr2:8250840 Sed04g0861 Sed-Chr4:7468115 2.20E-125 dispersed
Sed02g0066 Sed-Chr2:8250840 Sed02g0067 Sed-Chr2:8250840 5.50E-172 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g709 Blo02g00982 . Bda06g01261 Bda08g00639 Bpe05g00520 Bpe07g00233 . . Cmo06g00644 Cmo16g01226 . . . . Sed02g0067 Cpe14g00975 . Bhi11g00014 Tan01g2212 Cmetu06g0720 . . Mch10g1680 . Cla10g00138 Cam10g0137 Cec10g0147 Cco10g0147 Clacu10g0141 Cmu10g0988 Cre10g0399 Cone8ag0484 Cone12ag0481 . . Lsi07g01177 . . Cme06g02454 . . . . . . Bma05g00704 Bma12g00235 . . . Cma06g00638 Cma16g01176 Car06g00569 Car16g01109 . . . . . . . . . . . . . . . . . Csa03g00149 Chy06g02160 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed03g1567 . 8 339 SNARE and Associated Proteins AT3G24350 64.2 2.6e-103 373.2
Sed01g1323 . 8 334 SNARE and Associated Proteins AT3G24350 64.5 1.4e-101 367.5
Sed01g1324 . 8 334 SNARE and Associated Proteins AT3G24350 64.5 1.4e-101 367.5
Sed01g1325 . 28 354 SNARE and Associated Proteins AT3G24350 64.5 1.4e-101 367.5
Sed01g1326 . 8 334 SNARE and Associated Proteins AT3G24350 64.5 1.4e-101 367.5
Sed03g1566 . 8 287 SNARE and Associated Proteins AT3G24350 61.4 3.1e-80 296.6
Sed03g2400 . 1 308 SNARE and Associated Proteins AT1G08560 69.0 3.3e-102 369.4
Sed14g0695 . 1 308 SNARE and Associated Proteins AT1G08560 69.3 3.6e-101 365.9
Sed10g0918 . 1 291 SNARE and Associated Proteins AT2G18260 52.8 2.5e-78 290.0
Sed12g1336 . 19 279 SNARE and Associated Proteins AT3G11820 80.5 1.5e-115 413.7
Sed01g2057 . 31 282 SNARE and Associated Proteins AT3G11820 66.7 2.4e-92 336.7
Sed08g2301 . 31 281 SNARE and Associated Proteins AT3G11820 66.5 1.5e-91 334.0
Sed14g0266 . 28 276 SNARE and Associated Proteins AT3G11820 68.3 2.9e-90 329.7
Sed14g0267 . 28 276 SNARE and Associated Proteins AT3G11820 68.3 2.9e-90 329.7
Sed12g1058 . 24 284 SNARE and Associated Proteins AT3G11820 52.9 3.3e-70 263.1
Sed02g0884 . 25 283 SNARE and Associated Proteins AT3G11820 51.4 2.2e-66 250.4
Sed12g1060 . 24 230 SNARE and Associated Proteins AT3G11820 50.7 7.0e-52 202.2
Sed12g1059 . 24 228 SNARE and Associated Proteins AT3G11820 50.7 4.5e-51 199.5
Sed12g1336 . 30 279 SNARE and Associated Proteins AT3G52400 68.8 2.7e-89 326.6
Sed01g2057 . 1 282 SNARE and Associated Proteins AT3G52400 57.2 4.5e-81 299.3
Sed08g2301 . 1 281 SNARE and Associated Proteins AT3G52400 55.0 9.5e-79 291.6
Sed14g0266 . 28 276 SNARE and Associated Proteins AT3G52400 61.0 6.8e-77 285.4
Sed14g0267 . 28 276 SNARE and Associated Proteins AT3G52400 61.0 6.8e-77 285.4
Sed08g2301 . 1 295 SNARE and Associated Proteins AT4G03330 69.5 2.5e-107 386.3
Sed01g2057 . 1 300 SNARE and Associated Proteins AT4G03330 67.3 5.3e-105 378.6
Sed12g1336 . 1 279 SNARE and Associated Proteins AT4G03330 57.5 1.4e-81 300.8
Sed12g1058 . 1 284 SNARE and Associated Proteins AT4G03330 53.1 3.8e-71 266.2
Sed14g0266 . 28 274 SNARE and Associated Proteins AT4G03330 52.2 2.0e-67 253.8
Sed14g0267 . 28 274 SNARE and Associated Proteins AT4G03330 52.2 2.0e-67 253.8
Sed02g0884 . 1 283 SNARE and Associated Proteins AT4G03330 50.2 4.4e-67 252.7
Sed12g1060 . 1 230 SNARE and Associated Proteins AT4G03330 51.7 3.6e-53 206.5
Sed08g2301 . 1 303 SNARE and Associated Proteins AT1G61290 79.2 7.5e-128 454.5
Sed01g2057 . 1 304 SNARE and Associated Proteins AT1G61290 77.6 2.7e-125 446.0
Sed12g1336 . 1 279 SNARE and Associated Proteins AT1G61290 61.9 8.1e-90 328.2
Sed14g0266 . 1 292 SNARE and Associated Proteins AT1G61290 52.5 1.3e-76 284.3
Sed14g0267 . 1 292 SNARE and Associated Proteins AT1G61290 52.5 1.3e-76 284.3
Sed08g2301 . 1 303 SNARE and Associated Proteins AT1G11250 77.9 2.9e-124 442.6
Sed01g2057 . 1 304 SNARE and Associated Proteins AT1G11250 76.3 2.7e-122 436.0
Sed12g1336 . 1 279 SNARE and Associated Proteins AT1G11250 61.6 1.9e-91 333.6
Sed14g0266 . 1 287 SNARE and Associated Proteins AT1G11250 54.7 2.0e-80 297.0
Sed14g0267 . 1 287 SNARE and Associated Proteins AT1G11250 54.7 2.0e-80 297.0
Sed02g0884 . 1 283 SNARE and Associated Proteins AT1G11250 50.5 7.0e-70 261.9
Sed12g1058 . 1 284 SNARE and Associated Proteins AT1G11250 50.7 2.7e-69 260.0
Sed12g1058 . 1 307 SNARE and Associated Proteins AT3G03800 72.6 2.5e-115 412.9
Sed02g0884 . 1 306 SNARE and Associated Proteins AT3G03800 73.7 2.4e-113 406.4
Sed12g1060 . 1 230 SNARE and Associated Proteins AT3G03800 71.3 1.9e-86 317.0
Sed12g1059 . 1 228 SNARE and Associated Proteins AT3G03800 71.5 1.2e-85 314.3
Sed02g0885 . 1 229 SNARE and Associated Proteins AT3G03800 73.2 6.1e-85 312.0
Sed02g0886 . 1 229 SNARE and Associated Proteins AT3G03800 73.2 6.1e-85 312.0
Sed02g0887 . 1 229 SNARE and Associated Proteins AT3G03800 73.2 6.1e-85 312.0
Sed05g3073 . 47 320 SNARE and Associated Proteins AT3G03800 57.3 2.4e-81 300.1
Sed12g1058 . 1 202 SNARE and Associated Proteins AT5G08080 75.2 2.2e-76 283.1
Sed12g1059 . 1 202 SNARE and Associated Proteins AT5G08080 75.2 2.2e-76 283.1
Sed12g1060 . 1 202 SNARE and Associated Proteins AT5G08080 75.2 2.2e-76 283.1
Sed02g0884 . 1 201 SNARE and Associated Proteins AT5G08080 75.4 2.7e-74 276.2
Sed02g0885 . 1 201 SNARE and Associated Proteins AT5G08080 75.4 2.7e-74 276.2
Sed02g0886 . 1 201 SNARE and Associated Proteins AT5G08080 75.4 2.7e-74 276.2
Sed02g0887 . 1 201 SNARE and Associated Proteins AT5G08080 75.4 2.7e-74 276.2
Sed05g3073 . 29 219 SNARE and Associated Proteins AT5G08080 58.6 2.1e-50 196.8
Sed02g0066 . 66 321 SNARE and Associated Proteins AT5G16830 59.5 1.0e-75 281.2
Sed04g0861 . 1 255 SNARE and Associated Proteins AT5G16830 60.3 2.6e-74 276.6
Sed02g0067 . 66 318 SNARE and Associated Proteins AT5G16830 59.5 2.6e-74 276.6
Sed02g0066 . 66 321 SNARE and Associated Proteins AT5G46860 64.5 6.3e-78 288.5
Sed04g0861 . 1 255 SNARE and Associated Proteins AT5G46860 65.6 2.4e-77 286.6
Sed02g0067 . 66 318 SNARE and Associated Proteins AT5G46860 64.4 1.6e-76 283.9
Sed02g0066 . 66 321 SNARE and Associated Proteins AT4G17730 60.2 1.2e-73 274.2
Sed02g0067 . 66 307 SNARE and Associated Proteins AT4G17730 62.3 2.1e-73 273.5
Sed04g0861 . 1 255 SNARE and Associated Proteins AT4G17730 60.5 1.2e-70 264.2
Sed02g0066 . 130 321 SNARE and Associated Proteins AT1G32270 60.9 2.0e-52 204.1
Sed02g0067 . 130 322 SNARE and Associated Proteins AT1G32270 60.1 7.6e-52 202.2
Sed04g0861 . 65 255 SNARE and Associated Proteins AT1G32270 58.1 2.1e-49 194.1
Sed07g2558 . 1 334 SNARE and Associated Proteins AT5G05760 65.7 8.4e-112 401.4
Sed04g2893 . 1 334 SNARE and Associated Proteins AT5G05760 63.8 3.3e-108 389.4
Sed07g2559 . 1 218 SNARE and Associated Proteins AT5G05760 59.0 2.6e-60 230.3
Sed03g1567 . 8 339 SNARE and Associated Proteins AT3G24350 64.2 2.6e-103 373.2
Sed01g1323 . 8 334 SNARE and Associated Proteins AT3G24350 64.5 1.4e-101 367.5
Sed01g1324 . 8 334 SNARE and Associated Proteins AT3G24350 64.5 1.4e-101 367.5
Sed01g1325 . 28 354 SNARE and Associated Proteins AT3G24350 64.5 1.4e-101 367.5
Sed01g1326 . 8 334 SNARE and Associated Proteins AT3G24350 64.5 1.4e-101 367.5
Sed03g1566 . 8 287 SNARE and Associated Proteins AT3G24350 61.4 3.1e-80 296.6
Sed03g1942 . 1 327 SNARE and Associated Proteins AT5G26980 74.6 6.3e-125 444.9
Sed11g0395 . 1 325 SNARE and Associated Proteins AT5G26980 75.4 6.3e-125 444.9
Sed07g0550 . 1 320 SNARE and Associated Proteins AT5G26980 66.5 8.0e-104 374.8
Sed11g0396 . 1 244 SNARE and Associated Proteins AT5G26980 73.8 2.8e-88 323.2
Sed03g1943 . 1 246 SNARE and Associated Proteins AT5G26980 72.8 8.1e-88 321.6
Sed07g0551 . 1 245 SNARE and Associated Proteins AT5G26980 61.6 3.8e-69 259.6
Sed07g0550 . 1 320 SNARE and Associated Proteins AT4G02195 66.1 2.5e-105 379.8
Sed03g1942 . 1 329 SNARE and Associated Proteins AT4G02195 62.8 2.0e-102 370.2
Sed11g0395 . 1 327 SNARE and Associated Proteins AT4G02195 62.6 9.9e-102 367.9
Sed07g0551 . 1 259 SNARE and Associated Proteins AT4G02195 57.8 1.8e-71 267.3
Sed03g1943 . 1 246 SNARE and Associated Proteins AT4G02195 60.1 5.5e-68 255.8
Sed11g0396 . 1 244 SNARE and Associated Proteins AT4G02195 59.3 2.3e-66 250.4
Sed03g1942 . 1 328 SNARE and Associated Proteins AT3G05710 75.4 8.2e-128 454.5
Sed11g0395 . 1 326 SNARE and Associated Proteins AT3G05710 74.8 7.7e-126 448.0
Sed07g0550 . 1 320 SNARE and Associated Proteins AT3G05710 63.7 3.6e-99 359.4
Sed03g1943 . 1 246 SNARE and Associated Proteins AT3G05710 72.1 3.4e-89 326.2
Sed11g0396 . 1 244 SNARE and Associated Proteins AT3G05710 71.3 1.1e-87 321.2
Sed07g0551 . 1 241 SNARE and Associated Proteins AT3G05710 58.7 4.4e-65 246.1
Sed04g3695 . 1 233 SNARE and Associated Proteins AT1G16240 70.8 1.3e-87 320.5
Sed07g2702 . 1 231 SNARE and Associated Proteins AT1G16240 72.1 2.2e-87 319.7
Sed07g2703 . 1 231 SNARE and Associated Proteins AT1G16240 72.1 2.2e-87 319.7
Sed07g2704 . 1 231 SNARE and Associated Proteins AT1G16240 72.1 2.2e-87 319.7
Sed07g2705 . 1 231 SNARE and Associated Proteins AT1G16240 72.1 2.2e-87 319.7
Sed07g2702 . 1 231 SNARE and Associated Proteins AT1G79590 71.2 2.5e-87 319.7
Sed07g2703 . 1 231 SNARE and Associated Proteins AT1G79590 71.2 2.5e-87 319.7
Sed07g2704 . 1 231 SNARE and Associated Proteins AT1G79590 71.2 2.5e-87 319.7
Sed07g2705 . 1 231 SNARE and Associated Proteins AT1G79590 71.2 2.5e-87 319.7
Sed04g3695 . 1 233 SNARE and Associated Proteins AT1G79590 70.4 9.6e-87 317.8
Sed10g1784 . 48 240 SNARE and Associated Proteins AT1G28490 69.9 1.6e-65 246.9
Sed10g1783 . 56 247 SNARE and Associated Proteins AT1G28490 69.3 1.7e-64 243.4
Sed10g1785 . 56 247 SNARE and Associated Proteins AT1G28490 69.3 1.7e-64 243.4
Sed06g0902 . 56 246 SNARE and Associated Proteins AT1G28490 69.6 3.9e-64 242.3
Sed06g0903 . 56 246 SNARE and Associated Proteins AT1G28490 69.6 3.9e-64 242.3
Sed04g1347 . 1 264 SNARE and Associated Proteins AT3G09740 77.4 4.7e-110 395.2
Sed05g2859 . 46 308 SNARE and Associated Proteins AT3G09740 66.8 1.1e-93 340.9
Sed04g1347 . 1 264 SNARE and Associated Proteins AT3G45280 62.9 2.8e-86 316.2
Sed05g2859 . 46 308 SNARE and Associated Proteins AT3G45280 63.8 2.8e-86 316.2
Sed04g1347 . 1 261 SNARE and Associated Proteins AT3G61450 67.0 1.5e-92 337.0
Sed05g2859 . 46 305 SNARE and Associated Proteins AT3G61450 59.0 2.8e-83 306.2
Sed03g0404 . 65 310 SNARE and Associated Proteins AT1G51740 76.6 4.0e-95 345.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003742 3 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 2 1 1 3 1 2 45