Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed02g0067 | ATGTTCCAGCACCTCTTCAAAATAAATCATCATTCCGTTTTCTCTCTCCTCCATCATCGTCTTTCCCTCTCTAAAAAGTTGAATTGCTTTCCCCTCTTGGTTTCAATTTCCCCTAAGTCTGTATATCATCATTTGGGGATTTCTCTCCTTTCTTTCTTCTTGCTCGGAAAAGCTTGGATCCCGGCGGCGACCGACATGAGCTTCCAGGATATCGAGGCCGGTCGCCCCTTCGCGTCTTCCAGAAGAGACCTCGTCAATGGCAGACAGGATCCCACCCAAGCCGTCGCCTCCGGTATTTTTCAGATCAATACTGCCGTCGCTACCTTCCACAGGCTGGTTAACACCTTAGGAACGCCCAAGGATACTCCCGACCTACGCGACAAGCTGCACAAGACCAGGTTACATATTGGACAGTTGGTTAAAGATACCTCTGCTAAACTTAAACAGGCCAGTGATATTGATCATCACGCTGAAGTTAATGCCAGTAAGAAAATTGCAGATGCTAAACTTGCTAAAGATTTTCGAGCTGTGTTGAAGGAATTTCAGAAGGCTCAGCGACTTGCAGCTGAGAGGGAGACAGCATATACACCTTTTGTTCCACAGGCTGCTTTCCCTTCTAGCTACACAGCCAGTGAGTCGGATGCAAGCTCAGAAAAGAATTTTGAACAGCGTGCCCTTCTTGTGGAATCCAGGAGACAAGAGGTCTTGCTGTTGGACAATGAAATAGCATTCAATGAGGCAATAATTGAGGAAAGAGAGCAAGGTATTCATGAAATCCAGCAGCAGATTGGAGAAGTGAATGAAATTTTTAAAGATCTTGCGGTTCTAGTCCACGAACAGGGAACCATGATTGATGATATTGGATCCAACATCGAGAGCTCCCATGCTGCAACATCACAGGGAACGACTCAGCTTATAAAAGCTTCAAAGACACAAAGATCAAATTCATCTCTGGTGAGCCGTTGTGATTCCCTATATTCTTCAGCAGGTTCTATGTAG | 999 | 45.55 | MFQHLFKINHHSVFSLLHHRLSLSKKLNCFPLLVSISPKSVYHHLGISLLSFFLLGKAWIPAATDMSFQDIEAGRPFASSRRDLVNGRQDPTQAVASGIFQINTAVATFHRLVNTLGTPKDTPDLRDKLHKTRLHIGQLVKDTSAKLKQASDIDHHAEVNASKKIADAKLAKDFRAVLKEFQKAQRLAAERETAYTPFVPQAAFPSSYTASESDASSEKNFEQRALLVESRRQEVLLLDNEIAFNEAIIEEREQGIHEIQQQIGEVNEIFKDLAVLVHEQGTMIDDIGSNIESSHAATSQGTTQLIKASKTQRSNSSLVSRCDSLYSSAGSM | 332 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 8250840 | 8254454 | - | Sed0001604.2 | Sed02g0067 | 703735 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed02g0067 | 332 | Gene3D | - | 250 | 317 | - | - | |
Sed02g0067 | 332 | FunFam | Syntaxin-22 like | 239 | 326 | - | - | |
Sed02g0067 | 332 | SMART | tSNARE_6 | 241 | 308 | IPR000727 | - | |
Sed02g0067 | 332 | FunFam | Syntaxin-22 like | 86 | 199 | - | - | |
Sed02g0067 | 332 | ProSitePatterns | Syntaxin / epimorphin family signature. | 252 | 291 | IPR006012 | GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro) | |
Sed02g0067 | 332 | PANTHER | SYNTAXIN | 100 | 315 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
Sed02g0067 | 332 | Pfam | Syntaxin-like protein | 95 | 195 | IPR006011 | GO:0016020(InterPro) | |
Sed02g0067 | 332 | SUPERFAMILY | t-snare proteins | 89 | 301 | IPR010989 | GO:0016020(InterPro)|GO:0016192(InterPro) | |
Sed02g0067 | 332 | CDD | SNARE_Qa | 249 | 307 | - | - | |
Sed02g0067 | 332 | CDD | SynN | 87 | 225 | IPR006011 | GO:0016020(InterPro) | |
Sed02g0067 | 332 | Pfam | SNARE domain | 282 | 318 | IPR000727 | - | |
Sed02g0067 | 332 | SMART | SynN_4 | 80 | 193 | IPR006011 | GO:0016020(InterPro) | |
Sed02g0067 | 332 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 246 | 308 | IPR000727 | - | |
Sed02g0067 | 332 | Gene3D | - | 86 | 199 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g0067 | Sed-Chr2:8250840 | Sed04g0861 | Sed-Chr4:7468115 | 2.20E-125 | dispersed | |
Sed02g0066 | Sed-Chr2:8250840 | Sed02g0067 | Sed-Chr2:8250840 | 5.50E-172 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed02g0067 | - | - | - | 0.0 |