Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0067 ATGTTCCAGCACCTCTTCAAAATAAATCATCATTCCGTTTTCTCTCTCCTCCATCATCGTCTTTCCCTCTCTAAAAAGTTGAATTGCTTTCCCCTCTTGGTTTCAATTTCCCCTAAGTCTGTATATCATCATTTGGGGATTTCTCTCCTTTCTTTCTTCTTGCTCGGAAAAGCTTGGATCCCGGCGGCGACCGACATGAGCTTCCAGGATATCGAGGCCGGTCGCCCCTTCGCGTCTTCCAGAAGAGACCTCGTCAATGGCAGACAGGATCCCACCCAAGCCGTCGCCTCCGGTATTTTTCAGATCAATACTGCCGTCGCTACCTTCCACAGGCTGGTTAACACCTTAGGAACGCCCAAGGATACTCCCGACCTACGCGACAAGCTGCACAAGACCAGGTTACATATTGGACAGTTGGTTAAAGATACCTCTGCTAAACTTAAACAGGCCAGTGATATTGATCATCACGCTGAAGTTAATGCCAGTAAGAAAATTGCAGATGCTAAACTTGCTAAAGATTTTCGAGCTGTGTTGAAGGAATTTCAGAAGGCTCAGCGACTTGCAGCTGAGAGGGAGACAGCATATACACCTTTTGTTCCACAGGCTGCTTTCCCTTCTAGCTACACAGCCAGTGAGTCGGATGCAAGCTCAGAAAAGAATTTTGAACAGCGTGCCCTTCTTGTGGAATCCAGGAGACAAGAGGTCTTGCTGTTGGACAATGAAATAGCATTCAATGAGGCAATAATTGAGGAAAGAGAGCAAGGTATTCATGAAATCCAGCAGCAGATTGGAGAAGTGAATGAAATTTTTAAAGATCTTGCGGTTCTAGTCCACGAACAGGGAACCATGATTGATGATATTGGATCCAACATCGAGAGCTCCCATGCTGCAACATCACAGGGAACGACTCAGCTTATAAAAGCTTCAAAGACACAAAGATCAAATTCATCTCTGGTGAGCCGTTGTGATTCCCTATATTCTTCAGCAGGTTCTATGTAG 999 45.55 MFQHLFKINHHSVFSLLHHRLSLSKKLNCFPLLVSISPKSVYHHLGISLLSFFLLGKAWIPAATDMSFQDIEAGRPFASSRRDLVNGRQDPTQAVASGIFQINTAVATFHRLVNTLGTPKDTPDLRDKLHKTRLHIGQLVKDTSAKLKQASDIDHHAEVNASKKIADAKLAKDFRAVLKEFQKAQRLAAERETAYTPFVPQAAFPSSYTASESDASSEKNFEQRALLVESRRQEVLLLDNEIAFNEAIIEEREQGIHEIQQQIGEVNEIFKDLAVLVHEQGTMIDDIGSNIESSHAATSQGTTQLIKASKTQRSNSSLVSRCDSLYSSAGSM 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8250840 8254454 - Sed0001604.2 Sed02g0067 703735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0067 332 Gene3D - 250 317 - -
Sed02g0067 332 FunFam Syntaxin-22 like 239 326 - -
Sed02g0067 332 SMART tSNARE_6 241 308 IPR000727 -
Sed02g0067 332 FunFam Syntaxin-22 like 86 199 - -
Sed02g0067 332 ProSitePatterns Syntaxin / epimorphin family signature. 252 291 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Sed02g0067 332 PANTHER SYNTAXIN 100 315 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Sed02g0067 332 Pfam Syntaxin-like protein 95 195 IPR006011 GO:0016020(InterPro)
Sed02g0067 332 SUPERFAMILY t-snare proteins 89 301 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Sed02g0067 332 CDD SNARE_Qa 249 307 - -
Sed02g0067 332 CDD SynN 87 225 IPR006011 GO:0016020(InterPro)
Sed02g0067 332 Pfam SNARE domain 282 318 IPR000727 -
Sed02g0067 332 SMART SynN_4 80 193 IPR006011 GO:0016020(InterPro)
Sed02g0067 332 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 246 308 IPR000727 -
Sed02g0067 332 Gene3D - 86 199 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0067 Sed-Chr2:8250840 Sed04g0861 Sed-Chr4:7468115 2.20E-125 dispersed
Sed02g0066 Sed-Chr2:8250840 Sed02g0067 Sed-Chr2:8250840 5.50E-172 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0067 - - - 0.0