Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0108 ATGGCAATCGCATCATTGCCCGCCTTTGTGCTGGAAACAAGAATGGTCTCCTTGTACCACACACGACTACTGACCAAGCACTTGAGGAACAGCCTACCTGACCAAGTTGTTGTTCAACGTATACAAGAGAGACTCTCCGCTTTGGGAAACACTATTGCTTGTAATGATCATGTTGCTCTCATGCATACTGATCTCGACCGGGAAACGGAAGAGCTCATTGCTGATGTTCTTGGAGTAGAGGTTTTTAGGCAGACAGTAGCGGGTAATGTTCTCGTGGGAAGCTACTGTACCTTCACAAATAAGGGTGGCTTGGTTCATCCACATACGTCTATTGAAGATTTGGACGAACTATCAACTCTTCTTCAGGTTCCTTTAGTCGCCGGAACCGTGAATCGTGGAAGTGAGGTGATTGCGGCTGGACTGACAGCAAATGACTGGACTGCATTTTGTGGTTCAGACACAACTGCCACAGAATTATCAGTCATTGAAAGTGTTTTCAAATTGAGAGAGGCTCAACCAAGTTCCATTGTCGACGAAATGAGGAAGTCGCTAATAGACAGTTATGTGTGA 570 45.61 MAIASLPAFVLETRMVSLYHTRLLTKHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALMHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCTFTNKGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTAFCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19700377 19702176 + Sed0018955.1 Sed02g0108 703776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0108 189 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 26 188 IPR002769 GO:0000054(PANTHER)|GO:0000460(PANTHER)|GO:0000470(PANTHER)|GO:0005730(PANTHER)|GO:0005829(PANTHER)|GO:0030687(PANTHER)|GO:0042256(InterPro)|GO:0043022(InterPro)|GO:0043023(PANTHER)|GO:1902626(PANTHER)
Sed02g0108 189 Pfam eIF-6 family 19 147 IPR002769 GO:0042256(InterPro)|GO:0043022(InterPro)
Sed02g0108 189 NCBIfam translation initiation factor IF-6 24 168 IPR002769 GO:0042256(InterPro)|GO:0043022(InterPro)
Sed02g0108 189 SMART eIF6neu2 2 148 IPR002769 GO:0042256(InterPro)|GO:0043022(InterPro)
Sed02g0108 189 Gene3D - 8 169 - -
Sed02g0108 189 Hamap Translation initiation factor 6 [eif6]. 1 189 IPR002769 GO:0042256(InterPro)|GO:0043022(InterPro)
Sed02g0108 189 SUPERFAMILY Pentein 24 168 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0107 Sed-Chr2:19700221 Sed02g0108 Sed-Chr2:19700377 7.50E-102 tandem
Sed02g0108 Sed-Chr2:19700377 Sed02g0109 Sed-Chr2:19700377 7.50E-102 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0108 K03264 - csv:101212091 306.99