Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed02g0108 | ATGGCAATCGCATCATTGCCCGCCTTTGTGCTGGAAACAAGAATGGTCTCCTTGTACCACACACGACTACTGACCAAGCACTTGAGGAACAGCCTACCTGACCAAGTTGTTGTTCAACGTATACAAGAGAGACTCTCCGCTTTGGGAAACACTATTGCTTGTAATGATCATGTTGCTCTCATGCATACTGATCTCGACCGGGAAACGGAAGAGCTCATTGCTGATGTTCTTGGAGTAGAGGTTTTTAGGCAGACAGTAGCGGGTAATGTTCTCGTGGGAAGCTACTGTACCTTCACAAATAAGGGTGGCTTGGTTCATCCACATACGTCTATTGAAGATTTGGACGAACTATCAACTCTTCTTCAGGTTCCTTTAGTCGCCGGAACCGTGAATCGTGGAAGTGAGGTGATTGCGGCTGGACTGACAGCAAATGACTGGACTGCATTTTGTGGTTCAGACACAACTGCCACAGAATTATCAGTCATTGAAAGTGTTTTCAAATTGAGAGAGGCTCAACCAAGTTCCATTGTCGACGAAATGAGGAAGTCGCTAATAGACAGTTATGTGTGA | 570 | 45.61 | MAIASLPAFVLETRMVSLYHTRLLTKHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALMHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCTFTNKGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTAFCGSDTTATELSVIESVFKLREAQPSSIVDEMRKSLIDSYV | 189 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 19700377 | 19702176 | + | Sed0018955.1 | Sed02g0108 | 703776 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed02g0108 | 189 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 6 | 26 | 188 | IPR002769 | GO:0000054(PANTHER)|GO:0000460(PANTHER)|GO:0000470(PANTHER)|GO:0005730(PANTHER)|GO:0005829(PANTHER)|GO:0030687(PANTHER)|GO:0042256(InterPro)|GO:0043022(InterPro)|GO:0043023(PANTHER)|GO:1902626(PANTHER) | |
Sed02g0108 | 189 | Pfam | eIF-6 family | 19 | 147 | IPR002769 | GO:0042256(InterPro)|GO:0043022(InterPro) | |
Sed02g0108 | 189 | NCBIfam | translation initiation factor IF-6 | 24 | 168 | IPR002769 | GO:0042256(InterPro)|GO:0043022(InterPro) | |
Sed02g0108 | 189 | SMART | eIF6neu2 | 2 | 148 | IPR002769 | GO:0042256(InterPro)|GO:0043022(InterPro) | |
Sed02g0108 | 189 | Gene3D | - | 8 | 169 | - | - | |
Sed02g0108 | 189 | Hamap | Translation initiation factor 6 [eif6]. | 1 | 189 | IPR002769 | GO:0042256(InterPro)|GO:0043022(InterPro) | |
Sed02g0108 | 189 | SUPERFAMILY | Pentein | 24 | 168 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g0107 | Sed-Chr2:19700221 | Sed02g0108 | Sed-Chr2:19700377 | 7.50E-102 | tandem | |
Sed02g0108 | Sed-Chr2:19700377 | Sed02g0109 | Sed-Chr2:19700377 | 7.50E-102 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed02g0108 | K03264 | - | csv:101212091 | 306.99 |