Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0114 ATGCAGTGCTTCTTGGATCGACTTGAGCGATGCGTGGTCTCGGAAGCAAAGGAACCGATTTCTGCTCAGGATAATCATCTAGTGAATAAGGTGTTTGGTGGTCGTCTCATAAGCAATCTATGTTGTTGTAATTGTGGCCACTTTTCCGAAACCTATGAGCCTCTGGTCGACCTGAGTTTGGAGATTGAGAATGTGGATTCCCTGTCAAGTGCACTGGAGTCATTCACCAAGCTGGAGAGGATTGGTGATTTGGAGACAAAATTTAAGTGTGGAAACTGCAGAGAGGAGGTGCTGGTGGAGAAGCAGCTTAAGCTTGAAAAAATCCCTTCGGTTGCTACATTCCACTTAAAGAGATTCAAGGCTGATAGTCCTTTTGTTGAGAAAATTGAAAAGCACGTAGAGTTTCCGCTGGAGTTAGATTTGCAGCCGTATACCTTGGGTGGTCAGGATGCAGAGGTGGAGCTCAAGTATGAACTATATGCAATTGTGGAACACACAGGGTTTTCCTCTGCTTCTGGGCATTACTTTTGCTTTGTTCGTTCATCTCCCGATACATGGCACAGAATGGATGACTCAATGGTTACTTTGGTAAACGAAGATTACGTGCTATCACGAGAGGCCTACATATTGTTATATAAGAGAAAGGGGACTCCATGGGTCTTGAGTTTAATCCAACAACCAGATCCTTGCTTGAATTCAGATTCCTCAAATTCATCACTCAAGTCAGTTTTGCAAAATACCAGTACTGTCTGCCCTTCATATGCTGCTGAAGCTAACGTTGATCCTGAAACTGCAAATGCATTTACGAATACTTTGCCGTTGAGTCCGGCTCAGTTTTCTTGTGAAATGTGGGACAAAGATAACAGTGCCAATCATTTGGAAAATGATAACATACCTAACTTGCATATACCTGAGAGCGTGGGAAATCAGTCTTCTATTGTTAAGGAAGACCTCTATTCGAATGAAAAAGATGGATTTACTGATGGTTTTCGTCCTCAATCGCCAACAAGATCTCCCAGTCCAGATATTACTTTCCAGACTCCAGAACCACGATATCGAATTCCAGTCAATCACCTGAAGCCTGAAAAATGCTCCACATCTGGAAGGCAATTAAACAAGGGTGTGGAAGATCCTGAAAGAAAAGCAGCCCTGAGGTACATTAAGAAGAGCATGCCGGGGTCAAGGGGGTCAAAAATGATGGCTGCTTTATTGGAATCTCAAAGTGAAGGCTCTATGAACAAGAAGAAGAGGCTAAGGTCATCACAGTGTAAAAGATCGAGCCCACCTAATAATCGCCGCAAAACAAATCATAGTTCTGTGATGCATTTTGTGGCAGCTGAAAACTGA 1347 43.13 MQCFLDRLERCVVSEAKEPISAQDNHLVNKVFGGRLISNLCCCNCGHFSETYEPLVDLSLEIENVDSLSSALESFTKLERIGDLETKFKCGNCREEVLVEKQLKLEKIPSVATFHLKRFKADSPFVEKIEKHVEFPLELDLQPYTLGGQDAEVELKYELYAIVEHTGFSSASGHYFCFVRSSPDTWHRMDDSMVTLVNEDYVLSREAYILLYKRKGTPWVLSLIQQPDPCLNSDSSNSSLKSVLQNTSTVCPSYAAEANVDPETANAFTNTLPLSPAQFSCEMWDKDNSANHLENDNIPNLHIPESVGNQSSIVKEDLYSNEKDGFTDGFRPQSPTRSPSPDITFQTPEPRYRIPVNHLKPEKCSTSGRQLNKGVEDPERKAALRYIKKSMPGSRGSKMMAALLESQSEGSMNKKKRLRSSQCKRSSPPNNRRKTNHSSVMHFVAAEN 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22890259 22894279 - Sed0023966.3 Sed02g0114 703782

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0114 448 Pfam Ubiquitin carboxyl-terminal hydrolase 2 212 IPR001394 GO:0004843(InterPro)|GO:0016579(InterPro)
Sed02g0114 448 MobiDBLite consensus disorder prediction 331 345 - -
Sed02g0114 448 SUPERFAMILY Cysteine proteinases 2 214 IPR038765 -
Sed02g0114 448 MobiDBLite consensus disorder prediction 423 442 - -
Sed02g0114 448 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 157 175 IPR018200 GO:0004843(InterPro)
Sed02g0114 448 MobiDBLite consensus disorder prediction 323 351 - -
Sed02g0114 448 Gene3D Cysteine proteinases 1 217 - -
Sed02g0114 448 MobiDBLite consensus disorder prediction 389 448 - -
Sed02g0114 448 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1 215 IPR028889 -
Sed02g0114 448 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2 270 IPR050164 GO:0004843(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0016579(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0114 K11855 - - csv:101210383 635.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0112 Sed-Chr2:22890259 Sed02g0114 Sed-Chr2:22890259 1.80E-260 dispersed
Sed02g0114 Sed-Chr2:22890259 Sed04g0838 Sed-Chr4:7154868 1.10E-175 dispersed
Sed02g0113 Sed-Chr2:22890259 Sed02g0114 Sed-Chr2:22890259 8.40E-261 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g673 . . . . . . . Bma14g00154 . Cmo16g01210 . . . . Sed02g0114 Cpe14g00962 . Bhi11g00158 Tan01g2190 Cmetu06g2228 . . Mch10g1656 . Cla10g00157 Cam10g0157 Cec10g0167 Cco10g0166 Clacu10g0159 Cmu10g1008 Cre10g0418 Cone8ag0473 Cone12ag0467 . . Lsi07g01196 . . Cme06g02471 Blo03g00860 . Bda07g00098 . . Bpe11g00335 . . . . . . Cma16g01159 . Car16g01099 . . . . . . . . . . . . . . . . . Csa03g00168 Chy06g02145 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003716 1 3 2 2 2 1 1 1 1 1 1 1 2 2 2 1 1 2 1 1 2 2 2 2 1 1 1 4 1 1 46