Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0122 ATGGCTGGATTAGATTTAGGAAGTAGATATCTAACTCATCTCCAGCAGACCACGTCTGTGGATGATCCTTCAAACCTCGGGGCTCATTTCTCCGGTGAACACGAGGAAGATGACGATCCCCACCAAACCCTAGGCGGCCCGGGAGATGTTGTTGGCCGCCGCCCCCGTGGCCGACCACCAGGCTCTAAAAATAGGCCAAAGCCGCCAGTTATCATCACCCGCGAGAGCGCCAACACGCTGCGTGTCCACATCTTAGAGGTTGGTAGCGGCTGCGACGTGTTCGATTGCATCGCATCCTATGCCCGCCGACGGCAGCGAGGGATCTGTATTTTGAGCGGCAGTGGAAGCGTCACGAACGTGGGCCTCCGCCAGCCAGCAGCCGCAGGGTCGGTGTTGACTCTTCAAGGGAGGTTCCAGATTTTGTCGCTGTCAGGATCGTTTCTACCGCCACCTGCTCCGCCCGGTGCCACTAGTTTGAGTATATTTTTGGGGGGAGGGCAGGGACAGGTGGTTGGTGGGACGGTTGCCGGAGAATTAACGGCAGCAGGGCCGGTGTTTTTGATAGCGGCATCGTTTACCAATGTAGCATATGAGAGATTGCCACTAGATGATGAAGATCAGCAGCAAGCTTCGACAGCCGGCGGCGGCGGATTTGGTGGTGGCGGCAACAACAACAACAACAACCCATTTCAAGACCCATCAAGTTCAGGACTTCCATTCATGAATTTGCCTCTTCATATGCAAAATGTTCAGCTTCCACCTTTCTGA 768 54.95 MAGLDLGSRYLTHLQQTTSVDDPSNLGAHFSGEHEEDDDPHQTLGGPGDVVGRRPRGRPPGSKNRPKPPVIITRESANTLRVHILEVGSGCDVFDCIASYARRRQRGICILSGSGSVTNVGLRQPAAAGSVLTLQGRFQILSLSGSFLPPPAPPGATSLSIFLGGGQGQVVGGTVAGELTAAGPVFLIAASFTNVAYERLPLDDEDQQQASTAGGGGFGGGGNNNNNNPFQDPSSSGLPFMNLPLHMQNVQLPPF 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 26707387 26708154 - Sed0000355.1 Sed02g0122 703790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0122 255 FunFam AT-hook motif nuclear-localized protein 80 207 - -
Sed02g0122 255 ProSiteProfiles PPC domain profile profile. 77 215 IPR005175 -
Sed02g0122 255 MobiDBLite consensus disorder prediction 206 242 - -
Sed02g0122 255 SUPERFAMILY AF0104/ALDC/Ptd012-like 77 206 - -
Sed02g0122 255 MobiDBLite consensus disorder prediction 28 43 - -
Sed02g0122 255 CDD DUF296 81 163 IPR005175 -
Sed02g0122 255 Gene3D - 80 210 - -
Sed02g0122 255 PIRSF ESCAROLA 5 252 IPR014476 GO:0003680(InterPro)
Sed02g0122 255 MobiDBLite consensus disorder prediction 15 71 - -
Sed02g0122 255 Pfam Plants and Prokaryotes Conserved (PCC) domain 81 193 IPR005175 -
Sed02g0122 255 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 36 231 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4099 Sed-Chr1:69893436 Sed02g0122 Sed-Chr2:26707387 1.10E-81 dispersed
Sed02g0122 Sed-Chr2:26707387 Sed05g0289 Sed-Chr5:1834335 1.90E-79 dispersed
Sed02g0122 Sed-Chr2:26707387 Sed04g0827 Sed-Chr4:7002495 5.90E-102 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0122 - - - 0.0