Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0123 ATGGCGACGTTGGAATCTGCAATTCCAATAATCTACCAATACACTTGTTCTTCTTGTTCTTCATCTTCTTGCTGTTCCCGTAAGGCTAAATCATCGTTGAGCAAGCTTCCCTCCGCCATTAAGCTTCGCATTTCGTTCTCCTCCCCTCTCCTTTCCCTCACTCCTTCCCTCTCCTTTCTCTCCAATCCATCGCCGAATCGCAGCAGCAGCAGCAGCAGCCTCCCCCGATTGTGCTCTGCAATTCAGGAGGAGCTTAGTCTCGACGAAGCTTCGGACCAGAACCAGAAGAGGAAGCTGTACATCTTCAACCTACCATGGTCTCTCTCTGTCGTCGATATCAAGAAGCTCTTTGGACAATGCGGAACTGTCACTGATGTTGAGATTATAAAGCAGAAAAATGGAAGGAGCAGGGGATTTGCCTTTCTCACTATGTCTTCACCTGACCAAGCTCAAGCTGCTATTGATAAATTCAACTCTCAAGAAATATCAGGAAGAGTTATACAGGTAGAGTTTGCAAAGAGATTGAAGAAACCTCCTCCACCAAAGCCTCCAGGTCCTCCTCCTGGAGAGACAGTGAACAAACTATATGTATCAAACCTTGCATGGAAAGTGAGATCCAGCAATCTCAGAGATATGCTTTCTGAAAACTTCAATCCAATTGCAGCCAGGGTTGTGTTTGATAGCCCCTCTGGAAGATCAGCTGGATATGGCTTTGTTTCTTTTGCTACTCGAGAGGAAGCAGAAACTGCACTTTCTTCATTGGAGGGGAAGGAACAAGAGTCGGGGAAGACGATTGGACGTGCTAGGATGCTTGATGGCCTTTACTATTTTGAGGAAGCTTCAACTAGTCATAAAAAGGTTCAGGGTTTAAGTAGTGTTAGTTCTCCGTCTGTTAGGAATTGA 903 45.63 MATLESAIPIIYQYTCSSCSSSSCCSRKAKSSLSKLPSAIKLRISFSSPLLSLTPSLSFLSNPSPNRSSSSSSLPRLCSAIQEELSLDEASDQNQKRKLYIFNLPWSLSVVDIKKLFGQCGTVTDVEIIKQKNGRSRGFAFLTMSSPDQAQAAIDKFNSQEISGRVIQVEFAKRLKKPPPPKPPGPPPGETVNKLYVSNLAWKVRSSNLRDMLSENFNPIAARVVFDSPSGRSAGYGFVSFATREEAETALSSLEGKEQESGKTIGRARMLDGLYYFEEASTSHKKVQGLSSVSSPSVRN 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 29652958 29695064 + Sed0006524.1 Sed02g0123 703791

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0123 300 Gene3D - 193 266 IPR012677 -
Sed02g0123 300 Gene3D - 79 189 IPR012677 -
Sed02g0123 300 SMART rrm1_1 194 268 IPR000504 GO:0003723(InterPro)
Sed02g0123 300 SMART rrm1_1 98 170 IPR000504 GO:0003723(InterPro)
Sed02g0123 300 SUPERFAMILY RNA-binding domain, RBD 96 259 IPR035979 GO:0003676(InterPro)
Sed02g0123 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 174 IPR000504 GO:0003723(InterPro)
Sed02g0123 300 Pfam RNA recognition motif 99 167 IPR000504 GO:0003723(InterPro)
Sed02g0123 300 Pfam RNA recognition motif 195 258 IPR000504 GO:0003723(InterPro)
Sed02g0123 300 PANTHER OS02G0815200 PROTEIN 46 260 IPR050502 GO:0003729(PANTHER)|GO:0009535(PANTHER)|GO:1901259(PANTHER)
Sed02g0123 300 CDD RRM_SF 99 170 - -
Sed02g0123 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 193 265 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0123 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0123 Sed-Chr2:29652958 Sed04g0849 Sed-Chr4:7377887 1.70E-76 dispersed
Sed02g0123 Sed-Chr2:29652958 Sed04g1364 Sed-Chr4:28007368 1.50E-27 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g678 . . . . . . . . . Cmo16g01221 . . . . Sed02g0123 Cpe14g00970 . Bhi11g00026 Tan01g2201 Cmetu06g1790 . . Mch10g1673 . Cla10g00148 Cam10g0144 Cec10g0153 Cco10g0153 Clacu10g0147 Cmu10g0994 Cre10g0405 . . . . Lsi07g01183 . . Cme06g02461 Blo03g00866 . . . Bpe08g00829 . . . . . . . Cma16g01171 . Car16g01104 . . . . . . . . . . . . . . . . . Csa03g00157 Chy06g02152 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012628 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 29