Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed02g0124 | ATGAAAGGAAAGATTAGAGTTTACTGTCGACTTAGACCTCTTACTGAGAAAGAAATTATTGAAAAAGAGAAAAACGTGCTTATAAGTGTAAAGACCCGACCCAAAAGGGCTCTAAATGGGCCTTTACCCCAATGCATTCTAGATGAGTTCACAGTTGAACATTCATGGAAAGATGATAAGCCAAAGCAACATATGTATGATCGTTATCTAATTCAGTCTGTTGTTGATGGTTATAATGTATGCATATTTGCTTATGGTCAAACTGGTTCTGGTAAGACATTTACAATATATGGATCTGAGGAGCACCCTGGATTAACACCACGTGCCATTGGAGAACTTTTTAGGATTTTGAAGCGGGATAGCACCAAGTTCTCATTTTCATTAAAGGCATACATGGTAGTGGTAGAATTATATCAAGATACATTGGTTGATCTTATTTTGCCGAAGACTGCAAAGCGATCAAAATTAGATATAGAAAAGGATACGAAGCTTAGTTTTGTGGATCTTGCAGGGTCAGAGAGAGTGAAGAAGTCAGGTTCTTCTGGTAACCAACTTAAGGAAGCTCAAAGCATAAACAAATCACTTTCAGCACTTGGGGATGTTATCAGTGCTTTGTCCTCTGGGAACCAGCATATACCTTACAGAAATCATAAGCTAACAATGTTGATGAGTGATTCACTCGGTGGTAATGCCAAAACTCTTATGTTTGTCAACGTCTCTCCCGTAGAATTCAACTTGGACGAGACATACAATTCATTCATGTATGCATCCCGAGTTCGATCAATCGTTAACGATCCAAGCAAAAATGTATCATCTAAAGAGGTTGTTCGACTGAAGAAACTGGTTGCTTATTGGAAAGAGCAAGCACGTAGGAGGGGAGAGGACGATGACTTGGAAGAAATTCAAGAACAGCGACATCCTAATGAAAAAGCACTCGTTTGGTATTCCATGTAG | 954 | 38.99 | MKGKIRVYCRLRPLTEKEIIEKEKNVLISVKTRPKRALNGPLPQCILDEFTVEHSWKDDKPKQHMYDRYLIQSVVDGYNVCIFAYGQTGSGKTFTIYGSEEHPGLTPRAIGELFRILKRDSTKFSFSLKAYMVVVELYQDTLVDLILPKTAKRSKLDIEKDTKLSFVDLAGSERVKKSGSSGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPVEFNLDETYNSFMYASRVRSIVNDPSKNVSSKEVVRLKKLVAYWKEQARRRGEDDDLEEIQEQRHPNEKALVWYSM | 317 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 30250343 | 30256014 | + | Sed0006190.1 | Sed02g0124 | 703792 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed02g0124 | 317 | Pfam | Microtubule binding | 1 | 146 | IPR031852 | GO:0008017(InterPro) | |
| Sed02g0124 | 317 | ProSiteProfiles | Kinesin motor domain profile. | 163 | 262 | IPR001752 | GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro) | |
| Sed02g0124 | 317 | Gene3D | - | 270 | 311 | - | - | |
| Sed02g0124 | 317 | SMART | kinesin_4 | 2 | 270 | IPR001752 | GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro) | |
| Sed02g0124 | 317 | Pfam | Kinesin motor domain | 159 | 262 | IPR001752 | GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro) | |
| Sed02g0124 | 317 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 4 | 292 | IPR027417 | - | |
| Sed02g0124 | 317 | Gene3D | Kinesin motor domain | 1 | 161 | IPR036961 | - | |
| Sed02g0124 | 317 | ProSiteProfiles | Kinesin motor domain profile. | 4 | 161 | IPR001752 | GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro) | |
| Sed02g0124 | 317 | PRINTS | Kinesin heavy chain signature | 212 | 233 | IPR001752 | GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro) | |
| Sed02g0124 | 317 | PRINTS | Kinesin heavy chain signature | 77 | 98 | IPR001752 | GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro) | |
| Sed02g0124 | 317 | Gene3D | Kinesin motor domain | 162 | 269 | IPR036961 | - | |
| Sed02g0124 | 317 | PANTHER | KINESIN-LIKE PROTEIN KLP-3 | 162 | 304 | IPR027640 | GO:0003777(InterPro)|GO:0007018(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed02g0124 | Sed-Chr2:30250343 | Sed02g0208 | Sed-Chr2:34362208 | 1.20E-147 | dispersed | |
| Sed02g0124 | Sed-Chr2:30250343 | Sed04g1056 | Sed-Chr4:14632039 | 3.20E-129 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed02g0124 | K27887 | - | ath:AT5G65930 | 353.984 |