Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0141 ATGGTTTCGTCTCAGTTTTGTGGCTTGACCAAGACTAGCAAGACCAACCGGATTCGAAGTCAGCTTCTTTTCCCTACAAATGTTACCGATTGCGCATCTCTGGATTCTGTTAATCTGGATTTCTCTGATGTATTTGGCTCCATATCACTAAATGCCTCAACTGAAGTGGATGACATTGATTTAGATTTTCTTGTATGCCAAGAAGATTCACGTGAACTTATATATGATGAACCTGAAGTTATTTACAACCGATCTCATTCTTTGGTTGGTCCCTCGTCTTGTGCAAGTCAAACCCTGAAGCTAAGCAAACTAACTATTTCCGAGACTGAGGATTCAGGGGATTTAGTTGAATGTATCAGCAAGGAGACCAATAGCAAACTTCAAGAACATTTAAGTGATTCATTTATTGATAGAAATCTCGAAGGTGTTGATAGAGTTGAGAGTGTAGGGATTGATGACTTTGAAGTTCTAAAGGTTGTTGGACAAGGTGCTTTTGCTAAGGTTTATCAGGTGAGGCGAAAGGGTACATTAGAGATATATGCAATGAAGGTCATGCGAAAGGACAAGATAATGGAGAAGAACCATGTTCAATACATGAAAGCCGAGAGGGATATTTTAACAAAAACTGACCATCCATTCATTGTCCAGCTAAGATACTCATTCCAAACAAAATACAGGCTATATCTTGTTCTGGATTTTGTAAATGGTGGCCATCTTTTCTTTCAGCTGTATCATCATGGGCTTTTCAGAGAAGATCTTGCTCGTATTTATGCTGCAGAGATTGTTTTGGCTGTTTCTCATCTCCATTCAAATGGCATAATGCATAGGGATCTTAAACCTGAAAATATTTTACTAGATGACCTTGGCCATGTAATGTTGACCGATTTCGGTCTGGCGAAACAGTTTGAAGACGATACAAGATCGAATTCTATGTGTGGAACAGTTGAATATATGCCACCAGAAATAGTTCTCGGGAAAGGCCATGACAAGGCTGCAGATTGGTGGAGTGTAGGAATACTATTATTTGAAATGCTTACTGGGAAGCCTCCTTTCACAGGGAATCGGGAAAAAATCCAACAAAGGATAGTGAAGGACAAGATCAAGTTGCCAGCATTTTTGTCTAGTGAAGCACATTCTCTTTTAAAAGGGCTGCTTCAAAAGGAGGCGGGTAAGCGATTGGGCAGTGGTCCTGAGGGAAGTGAGGAAATAAAACGCCACAAGTGGTTCAAACCAATCCATTGGAAGAAATTGGAGAAGCGGGAGGTCCAGCCAAGCTTTCGGCCTGAAGTTGCTGGGAAACACTGTGTAGCCAACTTCGAGAAGCGTTGGACCGAAATGCCACTGGTTGATTCTCCAGTTGCCAGCCCTAAAACTGAAGGAAACCCCTTCACTGGCTTTAGCTATGTGAAACCTGCAGCCTCATTTCTCAACCTCAACAGAGATGCTGCATCCATCTATTGA 1461 41.62 MVSSQFCGLTKTSKTNRIRSQLLFPTNVTDCASLDSVNLDFSDVFGSISLNASTEVDDIDLDFLVCQEDSRELIYDEPEVIYNRSHSLVGPSSCASQTLKLSKLTISETEDSGDLVECISKETNSKLQEHLSDSFIDRNLEGVDRVESVGIDDFEVLKVVGQGAFAKVYQVRRKGTLEIYAMKVMRKDKIMEKNHVQYMKAERDILTKTDHPFIVQLRYSFQTKYRLYLVLDFVNGGHLFFQLYHHGLFREDLARIYAAEIVLAVSHLHSNGIMHRDLKPENILLDDLGHVMLTDFGLAKQFEDDTRSNSMCGTVEYMPPEIVLGKGHDKAADWWSVGILLFEMLTGKPPFTGNREKIQQRIVKDKIKLPAFLSSEAHSLLKGLLQKEAGKRLGSGPEGSEEIKRHKWFKPIHWKKLEKREVQPSFRPEVAGKHCVANFEKRWTEMPLVDSPVASPKTEGNPFTGFSYVKPAASFLNLNRDAASIY 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 30910012 30914725 + Sed0023672.1 Sed02g0141 703809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0141 486 Pfam Protein kinase C terminal domain 431 468 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g0141 486 FunFam Non-specific serine/threonine protein kinase 151 256 - -
Sed02g0141 486 CDD STKc_AGC 160 409 IPR045270 GO:0004674(InterPro)|GO:0005524(InterPro)
Sed02g0141 486 ProSitePatterns Serine/Threonine protein kinases active-site signature. 273 285 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed02g0141 486 Pfam Protein kinase domain 154 409 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g0141 486 Gene3D Transferase(Phosphotransferase) domain 1 234 428 - -
Sed02g0141 486 ProSiteProfiles AGC-kinase C-terminal domain profile. 410 478 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g0141 486 SMART pkinase_C_6 410 470 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g0141 486 Gene3D Phosphorylase Kinase; domain 1 151 450 - -
Sed02g0141 486 SUPERFAMILY Protein kinase-like (PK-like) 151 468 IPR011009 -
Sed02g0141 486 ProSitePatterns Protein kinases ATP-binding region signature. 160 183 IPR017441 GO:0005524(InterPro)
Sed02g0141 486 FunFam Non-specific serine/threonine protein kinase 234 428 - -
Sed02g0141 486 ProSiteProfiles Protein kinase domain profile. 154 409 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g0141 486 ProSiteProfiles Intein N-terminal splicing motif profile. 118 215 IPR006141 GO:0016539(InterPro)
Sed02g0141 486 PANTHER RIBOSOMAL PROTEIN S6 KINASE 125 474 - -
Sed02g0141 486 SMART serkin_6 154 409 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0141 Sed-Chr2:30910012 Sed12g1913 Sed-Chr12:30259913 2.60E-130 dispersed
Sed02g0141 Sed-Chr2:30910012 Sed08g0180 Sed-Chr8:1003832 8.60E-134 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78765 PF00069 Pkinase 1.10E-72 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0141 K04688 - mdm:103423523 722.235