Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed02g0147 | ATGTTTCCCCTGCTGCTGCTCTTCGCTTTCTTCGATACCGCCGTTTCCAATACTGATCCCCAGGATTTTGTGGCGCTGTTGTCCCTAAAAAATGAATGGCAAAATACACCACCAAGCTGGGAAACATCAAATGATCCCTGTGGAACTCCCTGGGAAGGAGTCACTTGCAACGATTCAAGAGTTACTGCACTGAGATTATCAACTATGGGCCTAAAAGGTCAACTTGGTGGTGACATTGGAGACCTTCCTGAACTAAAATCATTGGACCTCTCGTTCAATAGAGATCTCACTGGTTCAATCTCTTCATCATTGGGGAAACTACAGAATTTGAATATCTTGATCCTAGCTGGGTGTGGCTTTTCTGGCACTATTCCTGAAGAACTGGGCAATCTTGCTAAGCTATCCTTTTTGGCTTTAAATTCAAACAACTTCACTGGTCCCATACCACCCTCTTTGGGAAAACTCTCCGAACTCTATTGGCTGGACCTGGCCGACAATCAATTAACAGGTCCTCTCCCAGTCTCAACTCCGGCTGGATCTCCGGGTTTGGACCTCCTTCTCAAGGCTAAACACTTTCATTTCAACAAGAACCATCTATCAGGTTCCATTCCATCTAAACTTTTCAGCTCTGAAATGGTGTTAATACACATATTATTTGATGGAAATGAACTTTATGGGAGTATCCCTCCAACATTGGGACTTGTTAAGACCCTTGAGGTTCTTCGACTTGATCGAAATCTTCTAACAGGACATGTCCCTTCAAATTTGAACAACTTAACAAAAATCAATGAATTGAATTTAGCCAACAATAAGTTGACTGGTCCAATACCAAACTTATCTAATATGAGTTCACTGTCTTATGTGGACATTAGTAACAACTCATTTGATTCATCGATAGCTCCGGAATGGTTCTCAAGTCTACAACTGCTCACCACTCTGGTTGCTGAACATGGGTCAATACGAGGACCTGTGCCTCAAGGAGTCTTTAGCTTACGACAAATACAACAAATAAAATTGAAGAACAATGAACTCAGTGGGACATTAAATATGGGTTACAAAATCAGCCAACAGTTGCAGCTGGTTGATTTGCAAAGTAACAATATCTCTGAATTTACCCTTGGCCCAAAATATACCAAGACTTTGATGTTGATAGGGAATCCTGTGTGTAGTAATGACGGTACCCTCTCAATTACAAACTATTGCCAGCTTCAAAGTCATAATATGAAGCCTTATTTTACAAGTCTTTTTATGTGTGGAGATAAACGGTGTCCTCCAGATGAGAAGTTAAACCCTCAGAGTTGTGAATGTGCCTATCCATTTGAAGGGACTTTATACTTTAGGGCACCCTTGTTCAGGGAATTGTCCAATGCCACTTTGTTTAACTCACTGGAATCATCTCTTTGGACAAAGCTGGAGCTCACACCTGGTTCAGTTTCTATTCAATCCCTTTTCTTTAATGTTGACGATTATCTTCAGATGCAACTTGCTCTTTTTCCACCCAATGGAAAGTACTTTAACAGGTCGGATATTCAGAGGATTGGGTTTTATTTGACTAATCAAACTTACAAACCTCCCCATGAGTTTGGGCCGTATTATTTCATTGCATCTACTTATAGTTTTTCAGACATGGATGAGAGAACTTCAACCAACATTGGACTGATAATTGGGGTTGCTATTGGTTGTGCCTTTCTCGTTCTCGGCCTCATTGGAGTTGGAATATATGCAATTCGGCAAAAAAGACGTGCAGAAAAGGCTATTGGATCGAGTCGGCCATTCGCTTCTTGGGCACCAAGTGGAAATGATAGTGGAGGTGCACCACAATTGAAGGGAGCCCGATGGTTTTCTTATGATGAACTTAGAAAATGCACCGATAATTTCTCAGTGAGAAATGAAGTTGGATCTGGCGGATATGGCAAGGTATATCGGGGAATATTTGTGGACGGACAAGTAGTTGCGATCAAAAGAGCTCAACAAGGATCAAAGCAGGGTGGCCTTGAGTTCAAGACAGAAATAGAATTGCTCTCACGAGTTCATCACAAGAACCTTCTTGGCCTTCTAGGATTTTGTTTTGAACAAGGAGAACAAATACTTGTCTATGAATTTATGCCTAATGGAACTTTGAGAGATAGCCTATCTGGAAAATCTGGTGTTTTTCTTGATTGGAAGAGAAGACTTCGTATTGCGCTCGGGTCTGCCAGAGGATTGACATACTTACATGAACTTGCTAGCCCTCCCATAATCCATAGAGACATTAAGTCCACCAACATTCTATTGGATGAACGTTTAAATGCAAAAGTTGCAGACTTTGGCCTGTCCAAGCTTGTCTCAGACAATGAAAAGGGACACGTTTCTACTCAAGTTAAAGGAACATTGGGCTATTTGGATCCAGAATATTACATGACTCAACAATTAAGCGATAAAAGTGATGTATATAGCTTTGGAGTGGTGATGCTGGAACTGTTAACCGCTAAGCTGCCTATTGAAAAAGGAAAGTACGTAGTTCGTGAGGTGCGTATGTTGATGAACAAAAATGAAGAAGAATATTATGGTTTAAAGCAGATAATGGATCCAAGCATAATAAACAGCACAACAACTATAATTGGGCTCGGAAAGTTCTTAGAGTTGGCTATGCAATGCGTCGAAGAAACAGCTGCAGATCGTCCAACGATGAGCGAAGTGGCCAAGGCGATTGAGGGCATTTTGCAGAATGATGGAATAACAACCAACAATACATCTGCATCCTCATCTGCAACAGAATTTGGGACTTCCAAAACTGCTCCTAGGCATCCCTACATTGATCCCATAACAAAAAGGGACACTAATGACAGCAATGGTTCTGATTATAGTGGTGGATACACTCTTTCAACAAAAGTGGAACCCAAGTAG | 2886 | 41.23 | MFPLLLLFAFFDTAVSNTDPQDFVALLSLKNEWQNTPPSWETSNDPCGTPWEGVTCNDSRVTALRLSTMGLKGQLGGDIGDLPELKSLDLSFNRDLTGSISSSLGKLQNLNILILAGCGFSGTIPEELGNLAKLSFLALNSNNFTGPIPPSLGKLSELYWLDLADNQLTGPLPVSTPAGSPGLDLLLKAKHFHFNKNHLSGSIPSKLFSSEMVLIHILFDGNELYGSIPPTLGLVKTLEVLRLDRNLLTGHVPSNLNNLTKINELNLANNKLTGPIPNLSNMSSLSYVDISNNSFDSSIAPEWFSSLQLLTTLVAEHGSIRGPVPQGVFSLRQIQQIKLKNNELSGTLNMGYKISQQLQLVDLQSNNISEFTLGPKYTKTLMLIGNPVCSNDGTLSITNYCQLQSHNMKPYFTSLFMCGDKRCPPDEKLNPQSCECAYPFEGTLYFRAPLFRELSNATLFNSLESSLWTKLELTPGSVSIQSLFFNVDDYLQMQLALFPPNGKYFNRSDIQRIGFYLTNQTYKPPHEFGPYYFIASTYSFSDMDERTSTNIGLIIGVAIGCAFLVLGLIGVGIYAIRQKRRAEKAIGSSRPFASWAPSGNDSGGAPQLKGARWFSYDELRKCTDNFSVRNEVGSGGYGKVYRGIFVDGQVVAIKRAQQGSKQGGLEFKTEIELLSRVHHKNLLGLLGFCFEQGEQILVYEFMPNGTLRDSLSGKSGVFLDWKRRLRIALGSARGLTYLHELASPPIIHRDIKSTNILLDERLNAKVADFGLSKLVSDNEKGHVSTQVKGTLGYLDPEYYMTQQLSDKSDVYSFGVVMLELLTAKLPIEKGKYVVREVRMLMNKNEEEYYGLKQIMDPSIINSTTTIIGLGKFLELAMQCVEETAADRPTMSEVAKAIEGILQNDGITTNNTSASSSATEFGTSKTAPRHPYIDPITKRDTNDSNGSDYSGGYTLSTKVEPK | 961 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 31344702 | 31352471 | + | Sed0018232.1 | Sed02g0147 | 703815 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed02g0147 | 961 | SUPERFAMILY | L domain-like | 278 | 393 | - | - | |
Sed02g0147 | 961 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 746 | 758 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed02g0147 | 961 | ProSiteProfiles | Protein kinase domain profile. | 626 | 901 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed02g0147 | 961 | Pfam | Protein tyrosine and serine/threonine kinase | 628 | 895 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed02g0147 | 961 | SMART | serkin_6 | 626 | 901 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed02g0147 | 961 | MobiDBLite | consensus disorder prediction | 905 | 923 | - | - | |
Sed02g0147 | 961 | PANTHER | RECEPTOR-LIKE PROTEIN 55 | 26 | 898 | - | - | |
Sed02g0147 | 961 | SUPERFAMILY | L domain-like | 20 | 295 | - | - | |
Sed02g0147 | 961 | SUPERFAMILY | Protein kinase-like (PK-like) | 606 | 897 | IPR011009 | - | |
Sed02g0147 | 961 | Gene3D | Ribonuclease Inhibitor | 19 | 212 | IPR032675 | - | |
Sed02g0147 | 961 | FunFam | Leucine-rich repeat family protein | 21 | 177 | - | - | |
Sed02g0147 | 961 | FunFam | Leucine-rich repeat protein kinase family protein | 595 | 701 | - | - | |
Sed02g0147 | 961 | Gene3D | Transferase(Phosphotransferase) domain 1 | 702 | 922 | - | - | |
Sed02g0147 | 961 | Pfam | Leucine Rich Repeat | 134 | 155 | IPR001611 | GO:0005515(InterPro) | |
Sed02g0147 | 961 | Pfam | Leucine Rich Repeat | 284 | 307 | IPR001611 | GO:0005515(InterPro) | |
Sed02g0147 | 961 | Pfam | Leucine Rich Repeat | 109 | 131 | IPR001611 | GO:0005515(InterPro) | |
Sed02g0147 | 961 | ProSitePatterns | Protein kinases ATP-binding region signature. | 632 | 654 | IPR017441 | GO:0005524(InterPro) | |
Sed02g0147 | 961 | Gene3D | Ribonuclease Inhibitor | 278 | 414 | IPR032675 | - | |
Sed02g0147 | 961 | FunFam | Predicted protein | 181 | 401 | - | - | |
Sed02g0147 | 961 | Pfam | Leucine rich repeat N-terminal domain | 20 | 57 | IPR013210 | - | |
Sed02g0147 | 961 | CDD | STKc_IRAK | 632 | 900 | - | - | |
Sed02g0147 | 961 | MobiDBLite | consensus disorder prediction | 905 | 961 | - | - | |
Sed02g0147 | 961 | MobiDBLite | consensus disorder prediction | 937 | 953 | - | - | |
Sed02g0147 | 961 | Gene3D | Ribonuclease Inhibitor | 213 | 277 | IPR032675 | - | |
Sed02g0147 | 961 | FunFam | LRR receptor-like serine/threonine-protein kinase HSL2 | 702 | 913 | - | - | |
Sed02g0147 | 961 | Gene3D | Phosphorylase Kinase; domain 1 | 600 | 701 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g0147 | Sed-Chr2:31344702 | Sed02g0917 | Sed-Chr2:46603252 | 2.7e-312 | dispersed | |
Sed02g0147 | Sed-Chr2:31344702 | Sed02g0149 | Sed-Chr2:31375784 | 2.90E-298 | proximal | |
Sed04g0242 | Sed-Chr4:1798476 | Sed02g0147 | Sed-Chr2:31344702 | 4.10E-87 | transposed | |
Sed04g1067 | Sed-Chr4:15291957 | Sed02g0147 | Sed-Chr2:31344702 | 0.00E+00 | transposed | |
Sed10g1695 | Sed-Chr10:33824359 | Sed02g0147 | Sed-Chr2:31344702 | 5.50E-58 | transposed | |
Sed14g0553 | Sed-Chr14:5575599 | Sed02g0147 | Sed-Chr2:31344702 | 5.70E-89 | transposed | |
Sed14g0568 | Sed-Chr14:5681470 | Sed02g0147 | Sed-Chr2:31344702 | 9.50E-62 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78767 | PF07714 | PK_Tyr_Ser-Thr | 1.80E-45 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed02g0147 | - | - | - | 0.0 |