Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0147 ATGTTTCCCCTGCTGCTGCTCTTCGCTTTCTTCGATACCGCCGTTTCCAATACTGATCCCCAGGATTTTGTGGCGCTGTTGTCCCTAAAAAATGAATGGCAAAATACACCACCAAGCTGGGAAACATCAAATGATCCCTGTGGAACTCCCTGGGAAGGAGTCACTTGCAACGATTCAAGAGTTACTGCACTGAGATTATCAACTATGGGCCTAAAAGGTCAACTTGGTGGTGACATTGGAGACCTTCCTGAACTAAAATCATTGGACCTCTCGTTCAATAGAGATCTCACTGGTTCAATCTCTTCATCATTGGGGAAACTACAGAATTTGAATATCTTGATCCTAGCTGGGTGTGGCTTTTCTGGCACTATTCCTGAAGAACTGGGCAATCTTGCTAAGCTATCCTTTTTGGCTTTAAATTCAAACAACTTCACTGGTCCCATACCACCCTCTTTGGGAAAACTCTCCGAACTCTATTGGCTGGACCTGGCCGACAATCAATTAACAGGTCCTCTCCCAGTCTCAACTCCGGCTGGATCTCCGGGTTTGGACCTCCTTCTCAAGGCTAAACACTTTCATTTCAACAAGAACCATCTATCAGGTTCCATTCCATCTAAACTTTTCAGCTCTGAAATGGTGTTAATACACATATTATTTGATGGAAATGAACTTTATGGGAGTATCCCTCCAACATTGGGACTTGTTAAGACCCTTGAGGTTCTTCGACTTGATCGAAATCTTCTAACAGGACATGTCCCTTCAAATTTGAACAACTTAACAAAAATCAATGAATTGAATTTAGCCAACAATAAGTTGACTGGTCCAATACCAAACTTATCTAATATGAGTTCACTGTCTTATGTGGACATTAGTAACAACTCATTTGATTCATCGATAGCTCCGGAATGGTTCTCAAGTCTACAACTGCTCACCACTCTGGTTGCTGAACATGGGTCAATACGAGGACCTGTGCCTCAAGGAGTCTTTAGCTTACGACAAATACAACAAATAAAATTGAAGAACAATGAACTCAGTGGGACATTAAATATGGGTTACAAAATCAGCCAACAGTTGCAGCTGGTTGATTTGCAAAGTAACAATATCTCTGAATTTACCCTTGGCCCAAAATATACCAAGACTTTGATGTTGATAGGGAATCCTGTGTGTAGTAATGACGGTACCCTCTCAATTACAAACTATTGCCAGCTTCAAAGTCATAATATGAAGCCTTATTTTACAAGTCTTTTTATGTGTGGAGATAAACGGTGTCCTCCAGATGAGAAGTTAAACCCTCAGAGTTGTGAATGTGCCTATCCATTTGAAGGGACTTTATACTTTAGGGCACCCTTGTTCAGGGAATTGTCCAATGCCACTTTGTTTAACTCACTGGAATCATCTCTTTGGACAAAGCTGGAGCTCACACCTGGTTCAGTTTCTATTCAATCCCTTTTCTTTAATGTTGACGATTATCTTCAGATGCAACTTGCTCTTTTTCCACCCAATGGAAAGTACTTTAACAGGTCGGATATTCAGAGGATTGGGTTTTATTTGACTAATCAAACTTACAAACCTCCCCATGAGTTTGGGCCGTATTATTTCATTGCATCTACTTATAGTTTTTCAGACATGGATGAGAGAACTTCAACCAACATTGGACTGATAATTGGGGTTGCTATTGGTTGTGCCTTTCTCGTTCTCGGCCTCATTGGAGTTGGAATATATGCAATTCGGCAAAAAAGACGTGCAGAAAAGGCTATTGGATCGAGTCGGCCATTCGCTTCTTGGGCACCAAGTGGAAATGATAGTGGAGGTGCACCACAATTGAAGGGAGCCCGATGGTTTTCTTATGATGAACTTAGAAAATGCACCGATAATTTCTCAGTGAGAAATGAAGTTGGATCTGGCGGATATGGCAAGGTATATCGGGGAATATTTGTGGACGGACAAGTAGTTGCGATCAAAAGAGCTCAACAAGGATCAAAGCAGGGTGGCCTTGAGTTCAAGACAGAAATAGAATTGCTCTCACGAGTTCATCACAAGAACCTTCTTGGCCTTCTAGGATTTTGTTTTGAACAAGGAGAACAAATACTTGTCTATGAATTTATGCCTAATGGAACTTTGAGAGATAGCCTATCTGGAAAATCTGGTGTTTTTCTTGATTGGAAGAGAAGACTTCGTATTGCGCTCGGGTCTGCCAGAGGATTGACATACTTACATGAACTTGCTAGCCCTCCCATAATCCATAGAGACATTAAGTCCACCAACATTCTATTGGATGAACGTTTAAATGCAAAAGTTGCAGACTTTGGCCTGTCCAAGCTTGTCTCAGACAATGAAAAGGGACACGTTTCTACTCAAGTTAAAGGAACATTGGGCTATTTGGATCCAGAATATTACATGACTCAACAATTAAGCGATAAAAGTGATGTATATAGCTTTGGAGTGGTGATGCTGGAACTGTTAACCGCTAAGCTGCCTATTGAAAAAGGAAAGTACGTAGTTCGTGAGGTGCGTATGTTGATGAACAAAAATGAAGAAGAATATTATGGTTTAAAGCAGATAATGGATCCAAGCATAATAAACAGCACAACAACTATAATTGGGCTCGGAAAGTTCTTAGAGTTGGCTATGCAATGCGTCGAAGAAACAGCTGCAGATCGTCCAACGATGAGCGAAGTGGCCAAGGCGATTGAGGGCATTTTGCAGAATGATGGAATAACAACCAACAATACATCTGCATCCTCATCTGCAACAGAATTTGGGACTTCCAAAACTGCTCCTAGGCATCCCTACATTGATCCCATAACAAAAAGGGACACTAATGACAGCAATGGTTCTGATTATAGTGGTGGATACACTCTTTCAACAAAAGTGGAACCCAAGTAG 2886 41.23 MFPLLLLFAFFDTAVSNTDPQDFVALLSLKNEWQNTPPSWETSNDPCGTPWEGVTCNDSRVTALRLSTMGLKGQLGGDIGDLPELKSLDLSFNRDLTGSISSSLGKLQNLNILILAGCGFSGTIPEELGNLAKLSFLALNSNNFTGPIPPSLGKLSELYWLDLADNQLTGPLPVSTPAGSPGLDLLLKAKHFHFNKNHLSGSIPSKLFSSEMVLIHILFDGNELYGSIPPTLGLVKTLEVLRLDRNLLTGHVPSNLNNLTKINELNLANNKLTGPIPNLSNMSSLSYVDISNNSFDSSIAPEWFSSLQLLTTLVAEHGSIRGPVPQGVFSLRQIQQIKLKNNELSGTLNMGYKISQQLQLVDLQSNNISEFTLGPKYTKTLMLIGNPVCSNDGTLSITNYCQLQSHNMKPYFTSLFMCGDKRCPPDEKLNPQSCECAYPFEGTLYFRAPLFRELSNATLFNSLESSLWTKLELTPGSVSIQSLFFNVDDYLQMQLALFPPNGKYFNRSDIQRIGFYLTNQTYKPPHEFGPYYFIASTYSFSDMDERTSTNIGLIIGVAIGCAFLVLGLIGVGIYAIRQKRRAEKAIGSSRPFASWAPSGNDSGGAPQLKGARWFSYDELRKCTDNFSVRNEVGSGGYGKVYRGIFVDGQVVAIKRAQQGSKQGGLEFKTEIELLSRVHHKNLLGLLGFCFEQGEQILVYEFMPNGTLRDSLSGKSGVFLDWKRRLRIALGSARGLTYLHELASPPIIHRDIKSTNILLDERLNAKVADFGLSKLVSDNEKGHVSTQVKGTLGYLDPEYYMTQQLSDKSDVYSFGVVMLELLTAKLPIEKGKYVVREVRMLMNKNEEEYYGLKQIMDPSIINSTTTIIGLGKFLELAMQCVEETAADRPTMSEVAKAIEGILQNDGITTNNTSASSSATEFGTSKTAPRHPYIDPITKRDTNDSNGSDYSGGYTLSTKVEPK 961
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 31344702 31352471 + Sed0018232.1 Sed02g0147 703815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0147 961 SUPERFAMILY L domain-like 278 393 - -
Sed02g0147 961 ProSitePatterns Serine/Threonine protein kinases active-site signature. 746 758 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed02g0147 961 ProSiteProfiles Protein kinase domain profile. 626 901 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g0147 961 Pfam Protein tyrosine and serine/threonine kinase 628 895 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed02g0147 961 SMART serkin_6 626 901 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g0147 961 MobiDBLite consensus disorder prediction 905 923 - -
Sed02g0147 961 PANTHER RECEPTOR-LIKE PROTEIN 55 26 898 - -
Sed02g0147 961 SUPERFAMILY L domain-like 20 295 - -
Sed02g0147 961 SUPERFAMILY Protein kinase-like (PK-like) 606 897 IPR011009 -
Sed02g0147 961 Gene3D Ribonuclease Inhibitor 19 212 IPR032675 -
Sed02g0147 961 FunFam Leucine-rich repeat family protein 21 177 - -
Sed02g0147 961 FunFam Leucine-rich repeat protein kinase family protein 595 701 - -
Sed02g0147 961 Gene3D Transferase(Phosphotransferase) domain 1 702 922 - -
Sed02g0147 961 Pfam Leucine Rich Repeat 134 155 IPR001611 GO:0005515(InterPro)
Sed02g0147 961 Pfam Leucine Rich Repeat 284 307 IPR001611 GO:0005515(InterPro)
Sed02g0147 961 Pfam Leucine Rich Repeat 109 131 IPR001611 GO:0005515(InterPro)
Sed02g0147 961 ProSitePatterns Protein kinases ATP-binding region signature. 632 654 IPR017441 GO:0005524(InterPro)
Sed02g0147 961 Gene3D Ribonuclease Inhibitor 278 414 IPR032675 -
Sed02g0147 961 FunFam Predicted protein 181 401 - -
Sed02g0147 961 Pfam Leucine rich repeat N-terminal domain 20 57 IPR013210 -
Sed02g0147 961 CDD STKc_IRAK 632 900 - -
Sed02g0147 961 MobiDBLite consensus disorder prediction 905 961 - -
Sed02g0147 961 MobiDBLite consensus disorder prediction 937 953 - -
Sed02g0147 961 Gene3D Ribonuclease Inhibitor 213 277 IPR032675 -
Sed02g0147 961 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 702 913 - -
Sed02g0147 961 Gene3D Phosphorylase Kinase; domain 1 600 701 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0147 Sed-Chr2:31344702 Sed02g0917 Sed-Chr2:46603252 2.7e-312 dispersed
Sed02g0147 Sed-Chr2:31344702 Sed02g0149 Sed-Chr2:31375784 2.90E-298 proximal
Sed04g0242 Sed-Chr4:1798476 Sed02g0147 Sed-Chr2:31344702 4.10E-87 transposed
Sed04g1067 Sed-Chr4:15291957 Sed02g0147 Sed-Chr2:31344702 0.00E+00 transposed
Sed10g1695 Sed-Chr10:33824359 Sed02g0147 Sed-Chr2:31344702 5.50E-58 transposed
Sed14g0553 Sed-Chr14:5575599 Sed02g0147 Sed-Chr2:31344702 5.70E-89 transposed
Sed14g0568 Sed-Chr14:5681470 Sed02g0147 Sed-Chr2:31344702 9.50E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78767 PF07714 PK_Tyr_Ser-Thr 1.80E-45 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0147 - - - 0.0