Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0149 GACATTAGTAACAACTCATTTGATTCATCGATAGCTCCGAATTGGTTCTCAAATCTACAACTACTTACCACTCTGGTTGCTGAACATGGGTCAATTCAAGGACCTGTACCACAAGGAGTCTTTAGCTTGCAACAAATACAACAAATAAAACTGAAGAACAATTCTCTCAATGGGACATTAGATATGGGTTACAAAATTAGTCAACAGTTGCAGCTGGTCGATTTGCAAAGTAACAATATCTTTGAATTCACCAGTGGTCCAAAATATACCAAAACTTTGATGCTACTAGGGAATCCTGTGTGTAGTGATGGTACCCTCTCAACTATGAACTATTGCCAGCTTCAAGGACATAATATGAAGTCTTATTTTACAAGCCTTTTTATGTGTGGAAATAAGCAGTGTCCTTCTGATGAGAAATTAAACCCTCAGAGTTGTGAATGTGCCTACCCATTAGAAGGAACTTTATACTTTAGAGCACCCCCGTTAAGGGAATTATCCAATGCCACTTTGTTTAACATACTGGAATCATTTCTTTGGACCAAGCTGGAGCTTACACCTGGTTCAGTTTCAATTCAATCTCCTTTCTTTAATGTTGACGATTATCTTCAGATGAATGTTTCTCTTTTTCCACCAAACGGAAAGTATTTTAGCAGGTTGGATATTCTGAGGATTGGGTTTGAATTGAATCATCAAACTTCCAAACCTCCCCAAGAGTTTGGGCCATTTTATTTCATTGCATCTTCCTACTGTTTTTCAGACATGGATGAGACAACTTCAACAAGGATTGGATTGATCATTGGTGTAGCTATTGGTTGTGTCTTTCTCATTCTTGGCTTCATTGGAGTTGGAATATATGCGATTCTCCAAATAAAACATGCAAAAAAGGCTATTGGATTGAGTCAGCCATTCGCATATTGGGAACCAAGTGGAAATGATAGCGGAGGTGCACCACGATTGAAGGGAGCTAGATGGTTTTCTTATGATGAACTTAGAAAATGCACAAATAATTTCTCCATCAGAAATGAGATAGGAACTGGAGGATATGGCAAGGTATATCGAGGAATTTTTTTGGATGGACAAATAGTTGCAATCAAAAGGGCTCAACAAGGATCAAAGCAGGGCAGCCTTGAGTTCAAGACAGAAATTGAACTACTTTCACGAGTTCATCACAAGAATCTTCTTGGCCTTGTAGGATTTTGTTTTGAACAAGGAGAACAAATGCTTGTTTATGAATTTATGCCTAATGGAACACTGAGAGATAGCCTATCTGGAAATTCTGGTGTTTTTCTTGATTGGAAGAGAAGACTTCGTATTGCATTTGGGTCTGCAAGCGGATTGACATACTTACATGAACTTGCTAGTCCTTCCATAATCCATAGAGACATTAAGTCAACAAATATTCTATTGGATGAACATTTAAATGCTAAAGTTGCAGATTTTGGCATATCCAAGCTCTTCTCAGACAGTGAAAAGGGACACATTTCTACTCAAGTTAAAGGAACATTGGGTTATCTGGATCCAGAATATTACATGACTCAACAATTGACTGATAAAAGTGATGTATATAGCTTTGGAGTGGTGATGTTGGAACTATTAACTGCTAAGCTGCCTATTGAAAGGGGAAAGTACGTAGTTCATGAGGTGCGCATGTTGATGAACAAAAATGAAGAAGAATATTACGGTTTAAAACAGATAATAGATGCAACCATAATAAACAACACAACAGCTATCATTGGGCTTGAAAGGTTCTTGGAGTTGGCAATGCGATGCGTTGATGAAATAGCTGCAGAGCGTCCCACAATGAGTGAAGTGGCCAAGGAAATTGAGGGCATTTTGCAAAATGATGGAATAAGTACAAACAATACATTTGCAGCCTCATCTCCAATTTAA 1890 38.04 DISNNSFDSSIAPNWFSNLQLLTTLVAEHGSIQGPVPQGVFSLQQIQQIKLKNNSLNGTLDMGYKISQQLQLVDLQSNNIFEFTSGPKYTKTLMLLGNPVCSDGTLSTMNYCQLQGHNMKSYFTSLFMCGNKQCPSDEKLNPQSCECAYPLEGTLYFRAPPLRELSNATLFNILESFLWTKLELTPGSVSIQSPFFNVDDYLQMNVSLFPPNGKYFSRLDILRIGFELNHQTSKPPQEFGPFYFIASSYCFSDMDETTSTRIGLIIGVAIGCVFLILGFIGVGIYAILQIKHAKKAIGLSQPFAYWEPSGNDSGGAPRLKGARWFSYDELRKCTNNFSIRNEIGTGGYGKVYRGIFLDGQIVAIKRAQQGSKQGSLEFKTEIELLSRVHHKNLLGLVGFCFEQGEQMLVYEFMPNGTLRDSLSGNSGVFLDWKRRLRIAFGSASGLTYLHELASPSIIHRDIKSTNILLDEHLNAKVADFGISKLFSDSEKGHISTQVKGTLGYLDPEYYMTQQLTDKSDVYSFGVVMLELLTAKLPIERGKYVVHEVRMLMNKNEEEYYGLKQIIDATIINNTTAIIGLERFLELAMRCVDEIAAERPTMSEVAKEIEGILQNDGISTNNTFAASSPI 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 31375784 31379981 - Sed0003637.1 Sed02g0149 703817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0149 629 SUPERFAMILY Protein kinase-like (PK-like) 318 607 IPR011009 -
Sed02g0149 629 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed02g0149 629 FunFam Leucine-rich repeat protein kinase family protein 307 412 - -
Sed02g0149 629 ProSiteProfiles Protein kinase domain profile. 337 612 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g0149 629 CDD STKc_IRAK 343 611 - -
Sed02g0149 629 Pfam Protein kinase domain 339 606 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g0149 629 PANTHER RECEPTOR-LIKE PROTEIN 55 1 609 - -
Sed02g0149 629 Gene3D Phosphorylase Kinase; domain 1 311 412 - -
Sed02g0149 629 Gene3D Ribonuclease Inhibitor 1 147 IPR032675 -
Sed02g0149 629 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 413 624 - -
Sed02g0149 629 SMART serkin_6 337 617 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g0149 629 SUPERFAMILY L domain-like 1 103 - -
Sed02g0149 629 Gene3D Transferase(Phosphotransferase) domain 1 413 625 - -
Sed02g0149 629 ProSitePatterns Protein kinases ATP-binding region signature. 343 365 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0149 Sed-Chr2:31375784 Sed04g1067 Sed-Chr4:15291957 2.00E-268 dispersed
Sed02g0147 Sed-Chr2:31344702 Sed02g0149 Sed-Chr2:31375784 2.90E-298 proximal
Sed02g0149 Sed-Chr2:31375784 Sed02g0150 Sed-Chr2:31378103 6.30E-230 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78768 PF00069 Pkinase 1.70E-45 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0149 - - - 0.0