Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0179 ATGAATAACATAAACCAAGCGATAAATGCACTTGCTGCTGGTGGGTCTTCTGACAACAGAGCCAATAATTTCTCTATGGAAATTCCAAAATTCAAGTCTCTTCAACCTCCATCTTTTCCCATGTCTTCTTCTTCTTCTTACCTTTCATCTTTCTCTTCTGGTTTAAGCCCCACTGAGCTTCTTAATTCCCCTCTTCTCTTCTCTTTTGGCGCTTTTCCTTCTCCCACTACCGGCGCCTTGAGCTTGAAAAACGATTACGATGCTGCCGACCGCCAAGAAATGAAGGCGGATTTTAAAAACTACTCTGTTTCTTCGTTTAACCCTCAAACAGGATCCTCTGTTTCGTCGTATTTTCAGTCGTCTTCTTCCAACGTGACTTCAATGAATCCAGGCGGGTTGTCGTGTAATGAAAATGGGGCGAAATCTGAATTTGTTGGCACGGAAATGGCGGCTGCTCCATCGAAGCCAATTTCCCAGATGCCTGTTTACAACAGAGAGCAGGTTAAGTCGGAGAACGATGGATATAACTGGAGAAAATATGGTCAAAAACAGGTGAAAGGAAGTGAGAATCCACGAAGCTATTACAAGTGCACTTTTCCGAGCTGTCCAACGAAGAAGAAAGTTGAAAGATGTTTGGATGGACAAATTACTGAGATCGTTTATAAGGGAAGCCATAATCACCCCAAGCCCCAGCCCACGAGACGCTCTGGTGGCTCCGCCGTGTATGATTCGGCGGCCGCGGCGGAATCCTCCGTGCTGCAGGAGGATTCCTCCGTCTCGGTCGGGGATGACGAACCCAATTCACCGTTTAGCAACTCCGTGGGCGACAATGAAAATGAACCGGATGCTAAAAGATGGAAGGGAGAAAATGAAAATGAGGGATATTCTGGGGGTGGAAGCAGAACAGTGAAAGAGCCAAGAATTGTTGTTCAAACAACCAGCGAAATCGACATATTGCCTGATGGCTATAGATGGAGAAAATATGGACAAAAAGTTGTCAAAGGAAATCCAAATCCAAGTACATATTTCGGGTAA 1035 45.22 MNNINQAINALAAGGSSDNRANNFSMEIPKFKSLQPPSFPMSSSSSYLSSFSSGLSPTELLNSPLLFSFGAFPSPTTGALSLKNDYDAADRQEMKADFKNYSVSSFNPQTGSSVSSYFQSSSSNVTSMNPGGLSCNENGAKSEFVGTEMAAAPSKPISQMPVYNREQVKSENDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERCLDGQITEIVYKGSHNHPKPQPTRRSGGSAVYDSAAAAESSVLQEDSSVSVGDDEPNSPFSNSVGDNENEPDAKRWKGENENEGYSGGGSRTVKEPRIVVQTTSEIDILPDGYRWRKYGQKVVKGNPNPSTYFG 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33375080 33378264 - Sed0006136.1 Sed02g0179 703847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0179 344 ProSiteProfiles WRKY domain profile. 314 344 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed02g0179 344 Gene3D WRKY domain 157 231 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed02g0179 344 MobiDBLite consensus disorder prediction 222 307 - -
Sed02g0179 344 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 112 343 IPR044810 GO:0003700(InterPro)
Sed02g0179 344 FunFam WRKY transcription factor 159 231 - -
Sed02g0179 344 SUPERFAMILY WRKY DNA-binding domain 166 230 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed02g0179 344 SMART WRKY_cls 171 229 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed02g0179 344 Gene3D WRKY domain 306 344 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed02g0179 344 Pfam WRKY DNA -binding domain 321 343 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed02g0179 344 Pfam WRKY DNA -binding domain 172 228 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed02g0179 344 SUPERFAMILY WRKY DNA-binding domain 311 343 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed02g0179 344 ProSiteProfiles WRKY domain profile. 166 230 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed02g0179 344 MobiDBLite consensus disorder prediction 250 277 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0179 Sed-Chr2:33375080 Sed03g1367 Sed-Chr3:8701543 8.40E-43 dispersed
Sed02g0179 Sed-Chr2:33375080 Sed07g1962 Sed-Chr7:34269019 4.20E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37488 PF03106 WRKY 6.40E-25 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0179 K13424 - csv:101205651 495.352