Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0186 ATGGGAAAAAAAGGCCACAACTTTCTTTGTGGATTCCAGGCACACCCATTTCAGTCCATGCACATTTTTGCACCAAAACCAGTTGAGAACATCAAATGGAGGGTTTTTGCTCTGTTTTTTGCCCATCTTTTGCTTTTTTCTCTTCAACCGGTTACCGGTCAGATGTGGGATGGAGTGGCTGTTACTCAGGGAGATTTCCAAGCTCTTCAAGCTATAAAGCATGAACTTATTGATCTCAAAGGAGCTTTACATACCTGGAATGGCAGTAATGGAGTTTGTTCCGGGCAGTGGGCAGGAATCAAGTGTGTGAAGGGGCAGGTCATTGCTATACAGCTTCCATGGAAGGCACTCACCGGCACGATTTCCGACAGGATCGGGCAGCTCCGGGAACTTTGGAAGCTTAGCCTCCACGACAATGCGATTTCGGGTGCCGTTCCTCGGTCGCTTGGGTACCTTCCGAATCTCAGAGGAATTTATCTTTTCAACAACAGATTTTCAGGTTCTATTCCTCCTTCCATTGGTAATCTTCCCCTTCTTCAAACTCTTGATTTGAGCAACAATTTGCTCACTGGAGAAATTCCTTCTAGTCTTGCAAATTCTACCAAATTGATTAGAGTTAATCTGAGCTACAATTCATTGTCGGGATCGATCCCGAGTAGTTTTACGCATTCGTTTTCTCTTATAATTCTTGCCCTTCAGCACAATAATATTTCTGGGACTATCCCAGATTCTTGGGGTGGTTCTTCTGGAAATAGATCTTGCCCACTTGGGGTTTTAACACTTGATCATAATGTTATATCTGGGACAATTCCTGCTTCTTTGGGAAAATTGGAAGGGCTTCAAGAGATCTCCATAAGTGAAAATACGATCTCTGGAGCTATACCAAGTGGAATCGGCAGGCTGAAGCAGCTTCGCCTTTTGGATTTGTCGAAAAATGCCATTAATGGCAGCTTCCCTTCGAACTTCGTCAACCTCTCCTCGCTTGAGTCGTTGAATGTTGAATATAATCGTCTTGAGAGACAAATTCCTGGAGATATTGATAGGTTGCAGAATCTGTCAGTGGTTAAGCTTGGGAAGAATCGGTTTAGTGGTGAGATTCCTGCAAGCTTTGGGAACATTTCTGGTATTAGCCTACTTGATTTCTCTGAAAATAACTTCACAGGACAGATTCCAACATCATTGACCCATTTGTTGAATCTAACATCTTTCAATGTCTCTTACAACAATCTCTCTGGCCCTGTCCCAATTCTCCTTTCAAATAAGTTCAATGCCAGCTCTTTTGCTGGGAACCTTCAACTGTGTGGTTTTACTTCTTCAACTCCCTGTCTACCTGCAAATAATATTACATCTCCATCAATCGAGGTCCCGAAACTGCATCGCCACCGCAAACTTAGTGTGAAGGACATAATTCTGATCGCAGCAGGAGCTCTATTGGTGCTTCTACTTCTCCTTTGCTCCATTTTGCTTTGTTGTTTGTTGTCAAAAAGAGCTTCTGCCAAAAAGAGCAACAACACGACAGCAAAGCAAGCTGCTACGAGGAGCATTGAGAAGGCAGCGCCGGGCAGTACCGAAGTTGGGGCAGGTGAAGCCGGCGGAAAACTAGTTCATTTCGATGGGCCATTTGTGTTCACTGCTGACGATCTTCTATGCGCAACTGCCGAGATCATGGGCAAGAGCACATATGGAACAGCATACAAAGCAACATTAGAAGATGGCAATGAAGTTGCAGTAAAACGACTGAGAGAAAAGACAACAAAAGGGCAGAAAGAATTCGAAACAGAAGTTGCAGAACTCGGAAAGATTCGACACCCGAATCTACTTGCTCTTAGAGCTTACTACTTGGGTCCCAAAGGGGAGAAGCTTCTTGTCTTTGATTACATGGCTAGAGGAAGCCTCTCTTCCTTCCTTCATGCTCGCGGGCCAGAAACCGCAATCGATTGGCCGACAAGGATGAAGATAGCGATCGGAACGACTCAGGGGTTGAACTACCTCCACACCGAGGAGAATCTAATTCATGGAAACCTCACATCCAGCAACATTCTTCTGGATGATCAGAACAATGCACGTATTGCAGATTTCGGGGTTCCGAAGCTCATGACTTCAGCTGCAGCCACAAATGTGATTGCCACTGCAGGAACACAGGGATACAATGCACCAGAGCTAACAAAAACCAAAAAGCCAACAACAAAGACAGATGTTTACAGCTTGGGAGTGATAATATTGGAGCTTTTGACAGGGAAATCTCCTGGGGAAACCATGGATGGAATGGATTTACCTCAGTGGGTGGCCTCAATAGTGAAAGAGGAGTGGACAAATGAAGTGTTTGATTTGGAGCTCATGAAAGATACACAAAATATTGGTGATGAACTACTCAACACTTTGAAACTAGCCCTGCACTGTGTCGATCCCTCACCCGTTGCTCGGCCCGACGCTCAGCAAATTCTCCAGCAACTGGAAGAAATTAAGGCGGCTTCTACTTCCAGTGACGACGGTGCCAAAAATCAACCCCCAAATGAATAG 2520 44.84 MGKKGHNFLCGFQAHPFQSMHIFAPKPVENIKWRVFALFFAHLLLFSLQPVTGQMWDGVAVTQGDFQALQAIKHELIDLKGALHTWNGSNGVCSGQWAGIKCVKGQVIAIQLPWKALTGTISDRIGQLRELWKLSLHDNAISGAVPRSLGYLPNLRGIYLFNNRFSGSIPPSIGNLPLLQTLDLSNNLLTGEIPSSLANSTKLIRVNLSYNSLSGSIPSSFTHSFSLIILALQHNNISGTIPDSWGGSSGNRSCPLGVLTLDHNVISGTIPASLGKLEGLQEISISENTISGAIPSGIGRLKQLRLLDLSKNAINGSFPSNFVNLSSLESLNVEYNRLERQIPGDIDRLQNLSVVKLGKNRFSGEIPASFGNISGISLLDFSENNFTGQIPTSLTHLLNLTSFNVSYNNLSGPVPILLSNKFNASSFAGNLQLCGFTSSTPCLPANNITSPSIEVPKLHRHRKLSVKDIILIAAGALLVLLLLLCSILLCCLLSKRASAKKSNNTTAKQAATRSIEKAAPGSTEVGAGEAGGKLVHFDGPFVFTADDLLCATAEIMGKSTYGTAYKATLEDGNEVAVKRLREKTTKGQKEFETEVAELGKIRHPNLLALRAYYLGPKGEKLLVFDYMARGSLSSFLHARGPETAIDWPTRMKIAIGTTQGLNYLHTEENLIHGNLTSSNILLDDQNNARIADFGVPKLMTSAAATNVIATAGTQGYNAPELTKTKKPTTKTDVYSLGVIILELLTGKSPGETMDGMDLPQWVASIVKEEWTNEVFDLELMKDTQNIGDELLNTLKLALHCVDPSPVARPDAQQILQQLEEIKAASTSSDDGAKNQPPNE 839
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33432404 33435113 + Sed0005140.1 Sed02g0186 703854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0186 839 Pfam Protein tyrosine and serine/threonine kinase 554 818 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed02g0186 839 SUPERFAMILY Protein kinase-like (PK-like) 554 822 IPR011009 -
Sed02g0186 839 CDD STKc_IRAK 556 821 - -
Sed02g0186 839 SUPERFAMILY L domain-like 87 434 - -
Sed02g0186 839 Gene3D Ribonuclease Inhibitor 63 226 IPR032675 -
Sed02g0186 839 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 256 322 - -
Sed02g0186 839 ProSiteProfiles Protein kinase domain profile. 550 821 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g0186 839 Gene3D Ribonuclease Inhibitor 227 448 IPR032675 -
Sed02g0186 839 FunFam Leucine-rich repeat receptor-like protein kinase 536 626 - -
Sed02g0186 839 Gene3D Transferase(Phosphotransferase) domain 1 628 836 - -
Sed02g0186 839 FunFam Pollen receptor-like kinase 1 627 832 - -
Sed02g0186 839 SMART LRR_typ_2 128 151 IPR003591 -
Sed02g0186 839 SMART LRR_typ_2 176 200 IPR003591 -
Sed02g0186 839 SMART LRR_typ_2 325 349 IPR003591 -
Sed02g0186 839 SMART LRR_typ_2 152 175 IPR003591 -
Sed02g0186 839 SMART LRR_typ_2 301 324 IPR003591 -
Sed02g0186 839 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 63 213 - -
Sed02g0186 839 Gene3D Phosphorylase Kinase; domain 1 556 627 - -
Sed02g0186 839 Pfam Leucine rich repeat 258 314 IPR001611 GO:0005515(InterPro)
Sed02g0186 839 Pfam Leucine Rich Repeat 226 246 IPR001611 GO:0005515(InterPro)
Sed02g0186 839 Pfam Leucine Rich Repeat 399 420 IPR001611 GO:0005515(InterPro)
Sed02g0186 839 Pfam Leucine Rich Repeat 378 397 IPR001611 GO:0005515(InterPro)
Sed02g0186 839 Pfam Leucine Rich Repeat 203 223 IPR001611 GO:0005515(InterPro)
Sed02g0186 839 Pfam Leucine Rich Repeat 179 199 IPR001611 GO:0005515(InterPro)
Sed02g0186 839 Pfam Leucine Rich Repeat 154 176 IPR001611 GO:0005515(InterPro)
Sed02g0186 839 Pfam Leucine rich repeat N-terminal domain 64 102 IPR013210 -
Sed02g0186 839 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 323 442 - -
Sed02g0186 839 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 280 828 IPR052451 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0186 Sed-Chr2:33432404 Sed04g0362 Sed-Chr4:2632695 8.60E-158 dispersed
Sed02g0186 Sed-Chr2:33432404 Sed04g1121 Sed-Chr4:21586953 1.40E-219 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78770 PF07714 PK_Tyr_Ser-Thr 1.20E-39 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0186 - - - 0.0