Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0192 ATGAACAACACGGCGGCCGGATCTCCGCCGTGGCTGAACACCGGCGACAACGCGTGGCAAATCACGGCGTCCACCCTGGTGGGACTGCAGAGCATGCCGGGGCTGGTAATCCTGTACGCAAGCATCGTGAAGAAGAAATGGGCGGTGAACTCGGCGTTCATGGCGCTGTACGCCTTCGCGGCCGTCCTCATCTGCTGGGTGGTCCTGGGCTACCGCATGGCCTTCGGCGACCAGCTGCTCCCCCTGTGGGGCAAAGGGGTCCCCTCTCTCTCCCAAACCTACCTAATCAGGCAGGCCAACATCCCCGAGAGCGCCCACACCGGCTCCGACGGACGGGTAACGCCCAGGATCGAGCCCAATGTTCCCATGGCTTCCCTGGTGTACTTCCAATTCACCTTCGCCGCCATCACTGTCATTTTAGTTGCGGGCTCTGTTCTCGCCAGGATGAACATCAAGGCCTGGATGGCCTTCGTCCCTCTCTGGGTCATTTTCTCATACACCGTCGGCGCCTACACCGTGTGGGGCGGCGGCTTCCTGTTCCAGTGGGGCTTGATCGATTACTCCGGCGGCTACGTCATCCATCTCGCTTCCGGGATTTCAGGATTAACCGCTGCATACTGGGTTGGGCCCAGGATTAAGAGCGACCGAGAGAGGTTTCCGCCCAATAATGTGCTGCTGATGCTGGCGGGGGCGGGGATGCTGTGGATGGGGTGGTCCGGCTTCAACGGCGGGGCGCCCCACTCGGCCAACGTGGTGGCGTCCATAGCGGTGCTCAATACCAACGTCAGCGCCGCGGCCAGCCTCCTGGTGTGGACCATTTTGGATGTCTTCTACTTTGGGAAGCCATCCGTCATCGGCGCCATTCAGGGTATGATGACCGGCTTGGCTTGCGTTACCCCCGGCGCAGGAGTTGTGCAGACGTGGGCGGCTATTATCATGGGAGTTTTGGCGGGGAGTATTCCATGGGTTTCCATGATGATTCTCCATAAAAAATTGAGTTTCTTGCAAAAGGTTGACGACACGCTTGCGGTATTTCACACGCACGCGGTGGCCGGAATGATGGGCGGGCTTTTGACAGGGCTGTTGGCGGAGCCAACTCTATGCGAACTGTACCTACCAATCCCCGACACACGCGGCGCATTTTACGGCAGAAACGGCGGCGTCCAGTTTCTGAAACAATTGGCCGGAGCCGCCTTCATTATCGGATGGAATATCGTGTCCACCACCATCATTCTCCTCTTTATTCAACTTTTTATGCCGCTGAGGATGCCCGACGAGGAGCTCATGATTGGCGACGATGCCGTCCACGGTGAGGAGGCTTACGCTCTTTGGGCCGACGGCGAGAAATTCGATCCCAGAAGACATGACGGCGGGGCGGATAATGTGGAAGAAGGATCTGCGTCCCCTTATATCAATGGTGCTAGAGGATTAACCATCCCTTTGTGA 1446 58.3 MNNTAAGSPPWLNTGDNAWQITASTLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLICWVVLGYRMAFGDQLLPLWGKGVPSLSQTYLIRQANIPESAHTGSDGRVTPRIEPNVPMASLVYFQFTFAAITVILVAGSVLARMNIKAWMAFVPLWVIFSYTVGAYTVWGGGFLFQWGLIDYSGGYVIHLASGISGLTAAYWVGPRIKSDRERFPPNNVLLMLAGAGMLWMGWSGFNGGAPHSANVVASIAVLNTNVSAAASLLVWTILDVFYFGKPSVIGAIQGMMTGLACVTPGAGVVQTWAAIIMGVLAGSIPWVSMMILHKKLSFLQKVDDTLAVFHTHAVAGMMGGLLTGLLAEPTLCELYLPIPDTRGAFYGRNGGVQFLKQLAGAAFIIGWNIVSTTIILLFIQLFMPLRMPDEELMIGDDAVHGEEAYALWADGEKFDPRRHDGGADNVEEGSASPYINGARGLTIPL 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33539435 33543960 + Sed0012757.1 Sed02g0192 703860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0192 481 SUPERFAMILY Ammonium transporter 11 423 - -
Sed02g0192 481 FunFam Ammonium transporter 1 444 - -
Sed02g0192 481 NCBIfam ammonium transporter 16 441 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Sed02g0192 481 PRINTS Rhesus blood group protein signature 130 146 IPR002229 GO:0005886(InterPro)
Sed02g0192 481 PRINTS Rhesus blood group protein signature 256 278 IPR002229 GO:0005886(InterPro)
Sed02g0192 481 PRINTS Rhesus blood group protein signature 311 329 IPR002229 GO:0005886(InterPro)
Sed02g0192 481 PRINTS Rhesus blood group protein signature 225 243 IPR002229 GO:0005886(InterPro)
Sed02g0192 481 PANTHER AMMONIUM TRANSPORTER MEP2 10 452 IPR001905 GO:0005886(PANTHER)|GO:0008519(PANTHER)|GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(PANTHER)|GO:0072488(InterPro)
Sed02g0192 481 ProSitePatterns Ammonium transporters signature. 186 211 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Sed02g0192 481 Gene3D Ammonium transporter AmtB like domains 1 445 IPR029020 -
Sed02g0192 481 Pfam Ammonium Transporter Family 18 441 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0192 Sed-Chr2:33539435 Sed03g1588 Sed-Chr3:10090648 2.20E-145 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0192 K03320 - csv:101207321 866.3