Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed02g0193 | ATGGATATGGATATCGACCAAAATTTGATAGCCAAAGGGAAGGAAGAGCGAGAGAAGCTTTTAATGGTGATATTAGTTGGCGCACCAGGAAGCGGCAAATCCACCTTCTGCGAACTCGTAATGGGTTCTTCTTCTCGCCCCTGGGTTCGAATCTGCCAGGACACCATTGGAAATGGCAGGTCTGGAACCAAAGCACAGTGCTTGAAGAGTGCTGCCAATGCATTGAATGAGGGAAATAATGTATTTGTGGATAGGTGCAATCTTGAAATAGAGCAGCGTGCAGATTTTTTGAAACTAGGCGGTCTTCAAGTGGATAGACATGCTGTTGTATTGGATCTTCCTGCACAGCTTTGTATTTCTCGTTCCGTTAAGCGGTCTGGTCATGAAGGAAATTTATCAGGTGGAAAAGCTGCTGCTGTTGTGAATAAAATGCTGCAAAAGAAAGAATTGCCCAAGCTAAATGAAGGGTTCACTCGTATAACATTTTGTCACAATGAGACCGACGTTCAATCAGCTATAGATACGTATAAATCACTTGGTTTACATGATGCTCTTCCAGATGGATGTTTTGGACAGAAGAACACAGACAAGAAAGTACAGCTTGGCATAATGAAGTTTTTAAAGAAAACAGAAAATCCTTCTAAGGCGTGTTCTAGTGCCAATACCGTTAAGGATTCTCCAATTTCTCAAAATACCCAGGAAAAGAGCAACTCTTGTGACAAAAAGGAAGAGCCTGCCTGCACAGTGTTAAGCAATGTCGATAAAGAGTCTGCTAAAAGAGAAAATTCAAGCACTAGATCCTTAGAAGACAATATTTCAGAAAGTGATCTTCCAACTCTTGCATTTCCTTCTATTTCAACATCAGATTTCCAGTTTAGCAATGAAAAGGCTGCTGAAATTATTGTTGAGAAGGTTGAGGAATTCATGGATAGGTTGGGAAATGCTAGACTTGCGATGGTAGACTTGAGTCATGGATCAAAGATTTTGTCTTTGGTTAAAACTAGAGCGACTGAGAAAAATATTAGTCCTACCAAGTTCCTTACATTCGTAGGTGATATAACTAAACTTAATTCAGAAGGAGGATTGCGTTGCAATGTAATAACTAATCCTACAAACTGGCGACTGAAACCGGGAGGGGGTGGTGTCAATGCTGCAATTTTTAGTGCTGCAGGTCCTGATCTGGAAGTGGCAACTAAACAACAAGCTAACTCTCTTCGGCCTGGCAATGCCGTGGTCGTTCGAGTGCCTTCAACTTCTCCTTTATTTAATAGGGAAGGAGTAACTCATGTCATACATGTTCTTGGACCCAACATGAATCCAAAAAGGCCAAATTATCTCAACAATGACTATGACGAGGGTTGCAAGCTTCTCCGTGATGCTTACTCTTCTCTATTTCAAGGCTTTATTTCAATAGTAGAAGACCAATTTAAGTCGGTGAAGGGAATTCAAGAACGCCTCGGATCAGCAACTTCAGAATCACAAAAGCACTCTGAGGACAGTCGTCGCTGGTTTAAGAGAGAGGATTTACAAAATCCTGAAAAAAGCAAAAAGTTTAAAGGATCTCAGAATTCAACTGAAGCTATAAAGAAAAACAACAATAAGACTGTCCACAAAATGAGTAAACACTGGGGCTCATGGGCACAAGCACTTTACAACACTGCAATGCATCCCGAGAGTCACGGCGATGCTGTACTGGAGACATCAGATGATGTTATAGTACTTAATGATATTTATCCAAAAGCACGCAAGCATCTTTTAGTAGTTGCTCGGTGTGAAGGCCTCGATCAACTAGGCGATGTACGTAGAGAGCACCTTCCATTGTTGAGGACGATGCACGATGTGGGTTTGAAGTGGATCAATAAGTTCGTCCATGAAGATGCATCATTGGTTTTTCGTCTCGGGTACCACTCGGATCCATCCATGAGGCAACTGCACCTGCATGTTATAAGCCAGGATTTTGACTCCAGTCATCTGAAAAACAAGAAGCATTGGAATTCTTTCAACACCGAATTTTTCAGAGACTCGGTCTACATTATGGATGAAGTCGGTAGCCATGGAAAGGCAACCATCAAGGATGATGAGAGCTTGATGTCTATGGAGTTGCGTTGCAACAGATGCAGAAGTGTTCATCCCAACTTACCCAAATTGAAAACACATATTTCCAAATGCCAAACGCCTTTCCCTTCCATGCTACTTGAGGGCGGTCGTTTAGTGACCAAGTAA | 2223 | 41.88 | MDMDIDQNLIAKGKEEREKLLMVILVGAPGSGKSTFCELVMGSSSRPWVRICQDTIGNGRSGTKAQCLKSAANALNEGNNVFVDRCNLEIEQRADFLKLGGLQVDRHAVVLDLPAQLCISRSVKRSGHEGNLSGGKAAAVVNKMLQKKELPKLNEGFTRITFCHNETDVQSAIDTYKSLGLHDALPDGCFGQKNTDKKVQLGIMKFLKKTENPSKACSSANTVKDSPISQNTQEKSNSCDKKEEPACTVLSNVDKESAKRENSSTRSLEDNISESDLPTLAFPSISTSDFQFSNEKAAEIIVEKVEEFMDRLGNARLAMVDLSHGSKILSLVKTRATEKNISPTKFLTFVGDITKLNSEGGLRCNVITNPTNWRLKPGGGGVNAAIFSAAGPDLEVATKQQANSLRPGNAVVVRVPSTSPLFNREGVTHVIHVLGPNMNPKRPNYLNNDYDEGCKLLRDAYSSLFQGFISIVEDQFKSVKGIQERLGSATSESQKHSEDSRRWFKREDLQNPEKSKKFKGSQNSTEAIKKNNNKTVHKMSKHWGSWAQALYNTAMHPESHGDAVLETSDDVIVLNDIYPKARKHLLVVARCEGLDQLGDVRREHLPLLRTMHDVGLKWINKFVHEDASLVFRLGYHSDPSMRQLHLHVISQDFDSSHLKNKKHWNSFNTEFFRDSVYIMDEVGSHGKATIKDDESLMSMELRCNRCRSVHPNLPKLKTHISKCQTPFPSMLLEGGRLVTK | 740 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 33642769 | 33649001 | + | Sed0022379.1 | Sed02g0193 | 703861 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed02g0193 | 740 | SUPERFAMILY | HIT-like | 533 | 707 | IPR036265 | - | |
Sed02g0193 | 740 | Pfam | Scavenger mRNA decapping enzyme C-term binding | 551 | 663 | - | - | |
Sed02g0193 | 740 | Pfam | AAA domain | 22 | 149 | - | - | |
Sed02g0193 | 740 | ProSiteProfiles | Macro domain profile. | 333 | 586 | IPR002589 | - | |
Sed02g0193 | 740 | MobiDBLite | consensus disorder prediction | 485 | 532 | - | - | |
Sed02g0193 | 740 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 22 | 165 | IPR027417 | - | |
Sed02g0193 | 740 | Gene3D | - | 545 | 726 | IPR036265 | - | |
Sed02g0193 | 740 | Gene3D | Leucine Aminopeptidase, subunit E, domain 1 | 246 | 321 | IPR043472 | - | |
Sed02g0193 | 740 | PANTHER | APRATAXIN-RELATED | 84 | 739 | - | GO:0000012(PANTHER)|GO:0003697(PANTHER)|GO:0003725(PANTHER)|GO:0005634(PANTHER)|GO:0030983(PANTHER)|GO:0033699(PANTHER)|GO:1990165(PANTHER) | |
Sed02g0193 | 740 | SMART | YBR022w_8 | 345 | 555 | IPR002589 | - | |
Sed02g0193 | 740 | MobiDBLite | consensus disorder prediction | 214 | 235 | - | - | |
Sed02g0193 | 740 | SUPERFAMILY | Macro domain-like | 263 | 315 | IPR043472 | - | |
Sed02g0193 | 740 | ProSiteProfiles | HIT domain profile. | 550 | 658 | IPR011146 | GO:0003824(InterPro) | |
Sed02g0193 | 740 | FunFam | Transcription factor bHLH140 | 326 | 473 | - | - | |
Sed02g0193 | 740 | Gene3D | Leucine Aminopeptidase, subunit E, domain 1 | 322 | 479 | IPR043472 | - | |
Sed02g0193 | 740 | FunFam | aprataxin isoform X2 | 544 | 724 | - | - | |
Sed02g0193 | 740 | MobiDBLite | consensus disorder prediction | 491 | 515 | - | - | |
Sed02g0193 | 740 | Pfam | C2HE / C2H2 / C2HC zinc-binding finger | 668 | 722 | IPR032566 | - | |
Sed02g0193 | 740 | ProSitePatterns | HIT domain signature. | 632 | 650 | IPR019808 | - | |
Sed02g0193 | 740 | MobiDBLite | consensus disorder prediction | 214 | 243 | - | - | |
Sed02g0193 | 740 | FunFam | Transcription factor bHLH140 | 10 | 178 | - | - | |
Sed02g0193 | 740 | Pfam | Macro domain | 369 | 452 | IPR002589 | - | |
Sed02g0193 | 740 | Gene3D | - | 7 | 178 | IPR027417 | - | |
Sed02g0193 | 740 | MobiDBLite | consensus disorder prediction | 516 | 530 | - | - | |
Sed02g0193 | 740 | SUPERFAMILY | Macro domain-like | 326 | 466 | IPR043472 | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed02g0193 | K10863 | - | csv:101216867 | 1206.05 |