Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0193 ATGGATATGGATATCGACCAAAATTTGATAGCCAAAGGGAAGGAAGAGCGAGAGAAGCTTTTAATGGTGATATTAGTTGGCGCACCAGGAAGCGGCAAATCCACCTTCTGCGAACTCGTAATGGGTTCTTCTTCTCGCCCCTGGGTTCGAATCTGCCAGGACACCATTGGAAATGGCAGGTCTGGAACCAAAGCACAGTGCTTGAAGAGTGCTGCCAATGCATTGAATGAGGGAAATAATGTATTTGTGGATAGGTGCAATCTTGAAATAGAGCAGCGTGCAGATTTTTTGAAACTAGGCGGTCTTCAAGTGGATAGACATGCTGTTGTATTGGATCTTCCTGCACAGCTTTGTATTTCTCGTTCCGTTAAGCGGTCTGGTCATGAAGGAAATTTATCAGGTGGAAAAGCTGCTGCTGTTGTGAATAAAATGCTGCAAAAGAAAGAATTGCCCAAGCTAAATGAAGGGTTCACTCGTATAACATTTTGTCACAATGAGACCGACGTTCAATCAGCTATAGATACGTATAAATCACTTGGTTTACATGATGCTCTTCCAGATGGATGTTTTGGACAGAAGAACACAGACAAGAAAGTACAGCTTGGCATAATGAAGTTTTTAAAGAAAACAGAAAATCCTTCTAAGGCGTGTTCTAGTGCCAATACCGTTAAGGATTCTCCAATTTCTCAAAATACCCAGGAAAAGAGCAACTCTTGTGACAAAAAGGAAGAGCCTGCCTGCACAGTGTTAAGCAATGTCGATAAAGAGTCTGCTAAAAGAGAAAATTCAAGCACTAGATCCTTAGAAGACAATATTTCAGAAAGTGATCTTCCAACTCTTGCATTTCCTTCTATTTCAACATCAGATTTCCAGTTTAGCAATGAAAAGGCTGCTGAAATTATTGTTGAGAAGGTTGAGGAATTCATGGATAGGTTGGGAAATGCTAGACTTGCGATGGTAGACTTGAGTCATGGATCAAAGATTTTGTCTTTGGTTAAAACTAGAGCGACTGAGAAAAATATTAGTCCTACCAAGTTCCTTACATTCGTAGGTGATATAACTAAACTTAATTCAGAAGGAGGATTGCGTTGCAATGTAATAACTAATCCTACAAACTGGCGACTGAAACCGGGAGGGGGTGGTGTCAATGCTGCAATTTTTAGTGCTGCAGGTCCTGATCTGGAAGTGGCAACTAAACAACAAGCTAACTCTCTTCGGCCTGGCAATGCCGTGGTCGTTCGAGTGCCTTCAACTTCTCCTTTATTTAATAGGGAAGGAGTAACTCATGTCATACATGTTCTTGGACCCAACATGAATCCAAAAAGGCCAAATTATCTCAACAATGACTATGACGAGGGTTGCAAGCTTCTCCGTGATGCTTACTCTTCTCTATTTCAAGGCTTTATTTCAATAGTAGAAGACCAATTTAAGTCGGTGAAGGGAATTCAAGAACGCCTCGGATCAGCAACTTCAGAATCACAAAAGCACTCTGAGGACAGTCGTCGCTGGTTTAAGAGAGAGGATTTACAAAATCCTGAAAAAAGCAAAAAGTTTAAAGGATCTCAGAATTCAACTGAAGCTATAAAGAAAAACAACAATAAGACTGTCCACAAAATGAGTAAACACTGGGGCTCATGGGCACAAGCACTTTACAACACTGCAATGCATCCCGAGAGTCACGGCGATGCTGTACTGGAGACATCAGATGATGTTATAGTACTTAATGATATTTATCCAAAAGCACGCAAGCATCTTTTAGTAGTTGCTCGGTGTGAAGGCCTCGATCAACTAGGCGATGTACGTAGAGAGCACCTTCCATTGTTGAGGACGATGCACGATGTGGGTTTGAAGTGGATCAATAAGTTCGTCCATGAAGATGCATCATTGGTTTTTCGTCTCGGGTACCACTCGGATCCATCCATGAGGCAACTGCACCTGCATGTTATAAGCCAGGATTTTGACTCCAGTCATCTGAAAAACAAGAAGCATTGGAATTCTTTCAACACCGAATTTTTCAGAGACTCGGTCTACATTATGGATGAAGTCGGTAGCCATGGAAAGGCAACCATCAAGGATGATGAGAGCTTGATGTCTATGGAGTTGCGTTGCAACAGATGCAGAAGTGTTCATCCCAACTTACCCAAATTGAAAACACATATTTCCAAATGCCAAACGCCTTTCCCTTCCATGCTACTTGAGGGCGGTCGTTTAGTGACCAAGTAA 2223 41.88 MDMDIDQNLIAKGKEEREKLLMVILVGAPGSGKSTFCELVMGSSSRPWVRICQDTIGNGRSGTKAQCLKSAANALNEGNNVFVDRCNLEIEQRADFLKLGGLQVDRHAVVLDLPAQLCISRSVKRSGHEGNLSGGKAAAVVNKMLQKKELPKLNEGFTRITFCHNETDVQSAIDTYKSLGLHDALPDGCFGQKNTDKKVQLGIMKFLKKTENPSKACSSANTVKDSPISQNTQEKSNSCDKKEEPACTVLSNVDKESAKRENSSTRSLEDNISESDLPTLAFPSISTSDFQFSNEKAAEIIVEKVEEFMDRLGNARLAMVDLSHGSKILSLVKTRATEKNISPTKFLTFVGDITKLNSEGGLRCNVITNPTNWRLKPGGGGVNAAIFSAAGPDLEVATKQQANSLRPGNAVVVRVPSTSPLFNREGVTHVIHVLGPNMNPKRPNYLNNDYDEGCKLLRDAYSSLFQGFISIVEDQFKSVKGIQERLGSATSESQKHSEDSRRWFKREDLQNPEKSKKFKGSQNSTEAIKKNNNKTVHKMSKHWGSWAQALYNTAMHPESHGDAVLETSDDVIVLNDIYPKARKHLLVVARCEGLDQLGDVRREHLPLLRTMHDVGLKWINKFVHEDASLVFRLGYHSDPSMRQLHLHVISQDFDSSHLKNKKHWNSFNTEFFRDSVYIMDEVGSHGKATIKDDESLMSMELRCNRCRSVHPNLPKLKTHISKCQTPFPSMLLEGGRLVTK 740
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33642769 33649001 + Sed0022379.1 Sed02g0193 703861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0193 740 SUPERFAMILY HIT-like 533 707 IPR036265 -
Sed02g0193 740 Pfam Scavenger mRNA decapping enzyme C-term binding 551 663 - -
Sed02g0193 740 Pfam AAA domain 22 149 - -
Sed02g0193 740 ProSiteProfiles Macro domain profile. 333 586 IPR002589 -
Sed02g0193 740 MobiDBLite consensus disorder prediction 485 532 - -
Sed02g0193 740 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 22 165 IPR027417 -
Sed02g0193 740 Gene3D - 545 726 IPR036265 -
Sed02g0193 740 Gene3D Leucine Aminopeptidase, subunit E, domain 1 246 321 IPR043472 -
Sed02g0193 740 PANTHER APRATAXIN-RELATED 84 739 - GO:0000012(PANTHER)|GO:0003697(PANTHER)|GO:0003725(PANTHER)|GO:0005634(PANTHER)|GO:0030983(PANTHER)|GO:0033699(PANTHER)|GO:1990165(PANTHER)
Sed02g0193 740 SMART YBR022w_8 345 555 IPR002589 -
Sed02g0193 740 MobiDBLite consensus disorder prediction 214 235 - -
Sed02g0193 740 SUPERFAMILY Macro domain-like 263 315 IPR043472 -
Sed02g0193 740 ProSiteProfiles HIT domain profile. 550 658 IPR011146 GO:0003824(InterPro)
Sed02g0193 740 FunFam Transcription factor bHLH140 326 473 - -
Sed02g0193 740 Gene3D Leucine Aminopeptidase, subunit E, domain 1 322 479 IPR043472 -
Sed02g0193 740 FunFam aprataxin isoform X2 544 724 - -
Sed02g0193 740 MobiDBLite consensus disorder prediction 491 515 - -
Sed02g0193 740 Pfam C2HE / C2H2 / C2HC zinc-binding finger 668 722 IPR032566 -
Sed02g0193 740 ProSitePatterns HIT domain signature. 632 650 IPR019808 -
Sed02g0193 740 MobiDBLite consensus disorder prediction 214 243 - -
Sed02g0193 740 FunFam Transcription factor bHLH140 10 178 - -
Sed02g0193 740 Pfam Macro domain 369 452 IPR002589 -
Sed02g0193 740 Gene3D - 7 178 IPR027417 -
Sed02g0193 740 MobiDBLite consensus disorder prediction 516 530 - -
Sed02g0193 740 SUPERFAMILY Macro domain-like 326 466 IPR043472 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0193 K10863 - csv:101216867 1206.05