Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed02g0213 | ATGGAAGGTCATCATTTTCATTCCTTTGTTCAGCTCCACCTCCAGCAACAGCAGCAGCTTCAACATCCGCCACAGCACCTCCACCGGAACCTAGCCGTCGCCGACGACCAAACCCCCGCCGGCGCCGGCGAAAAATTCCCTCAATGGAGCATTCAGGAAACAAAGGAGTTTCTGGTGATCAGAGGCGAGCTGGATCAGACGTTCATGGAGACCAAAAGAAACAAGCTCTTGTGGGAAATCACTGCCTCCAAAATGAACCAAAAGGGTTTCCATCGCACCGCTGAACAGTGTAAATCTAAATGGAAAAACCTCGTTACCCGTTTTAAGGGTTGTGAAACAATAGAGCCAGAAGTTTCAAGGCAGCAGTTTCCATTCTACACAGAACTGCAAGCAATTTTCGGGGCAAGAATGCAGCGAATATTATGGGCAGAAGCGGAGAGCAGCGGGAGCAAGTCGAAGAAGAAGATGATGGTGTTATCGTCGGATGAAGACGAAGAAAACGAGGACAGCCATGGGGACGGAGGCAATACAAAAGGCGGTAGTAAGGGGAGGAAGAAGGGTAAAGGAAGTGTTGGAGCTACGGCAGGCAACAGCGGGGGAAGCAGTAGTTTCAATCATTTGAAAGAAGTATTGGAAGATTTCATGAACCAACAAATACAAATGGAGATTCAATGGAGGGAGGCATTTGAAGCAAGGGAAAAGGAGAGGGAAATGAGGGAAATGGAGTGGAGAAGGAACATGGAAGCTTTAGAACATGAGAGGATAATGTTTGAAACAAGATGGAGTGAAAGAGAAGAACAAAGAAGAATGAGAGAGGAAGTTAGGGCTGAGAAAAGAGATGCTTTAATCACAGCTTTGTTAAACAAAATTAGAAGAGATGATCATATGTAG | 891 | 46.13 | MEGHHFHSFVQLHLQQQQQLQHPPQHLHRNLAVADDQTPAGAGEKFPQWSIQETKEFLVIRGELDQTFMETKRNKLLWEITASKMNQKGFHRTAEQCKSKWKNLVTRFKGCETIEPEVSRQQFPFYTELQAIFGARMQRILWAEAESSGSKSKKKMMVLSSDEDEENEDSHGDGGNTKGGSKGRKKGKGSVGATAGNSGGSSSFNHLKEVLEDFMNQQIQMEIQWREAFEAREKEREMREMEWRRNMEALEHERIMFETRWSEREEQRRMREEVRAEKRDALITALLNKIRRDDHM | 296 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 34689560 | 34691534 | - | Sed0021500.1 | Sed02g0213 | 703881 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed02g0213 | 296 | MobiDBLite | consensus disorder prediction | 152 | 204 | - | - | |
Sed02g0213 | 296 | PANTHER | FI21293P1 | 25 | 292 | - | - | |
Sed02g0213 | 296 | ProSiteProfiles | Myb-like domain profile. | 49 | 105 | IPR001005 | - | |
Sed02g0213 | 296 | Pfam | Myb/SANT-like DNA-binding domain | 48 | 132 | IPR044822 | - | |
Sed02g0213 | 296 | FunFam | Zinc finger and SCAN domain-containing 20 | 49 | 110 | - | - | |
Sed02g0213 | 296 | CDD | GT1 | 47 | 112 | - | - | |
Sed02g0213 | 296 | Gene3D | - | 49 | 110 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g0213 | Sed-Chr2:34689560 | Sed03g2503 | Sed-Chr3:32263902 | 3.70E-39 | dispersed | |
Sed13g0759 | Sed-Chr13:5409255 | Sed02g0213 | Sed-Chr2:34689560 | 5.60E-21 | transposed | |
Sed02g0213 | Sed-Chr2:34689560 | Sed04g1155 | Sed-Chr4:23598843 | 3.90E-81 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37489 | PF13837 | Myb_DNA-bind_4 | 1.40E-18 | CL0123 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed02g0213 | - | - | - | 0.0 |