Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0224 ATGGATTTGGAACAAGAAACGTCGATCTGGCAAAACGGCGCCGTCAAGGGTCCGCTGAGTCACGGTCGGTGGGTTCACAACATGTCGTCGTCATCGCTACGCAAGAAGTCGGACTTGACCCTGGTTTCCAAGGTTCGTTTCGGTTTTCTCAGGCTGTTGCTTGTGAATCTTCAGGAGGTCATTTTGGGAACCAGGATTTGGTTTCTTTTTCCGGCGATTCCCTTCGCTGTTTTGGCCCATACTTTTCACTTCGGAAGAGCATGGGTTTTTGTTCTTAGCTTACTGGGCCTCGCTCCCCTCGCTGAACGCCTCAGCTTTCTGACCGAACAAATTTCATTCTTTACCGGCCCCACAGTTGGGGGATTACTAAATGCGACATGTGGCAATGCGACGGAGCTAATCATAGCAATATTTGCACTTAGCAAAGACAAGGTTGAGTTGGTGAAGTATTCTCTTTTGGGATCTGTTCTTTCGAACCTTCTTCTTGTTCTTGGAACCTCCCTCTTCATTGGTGGCATCGTCAATCTTAGGAAACAACAAACCTATGACCGAAGACAAGCTGAAGTTAACACACACATGTTGTTGTTGGCACTTTTATGCTATTCTTTACCGATGTTGTTCCACTACGTGGAGGAGTCTGTTGATGTAGCCGGAGCTGAAGGACTACGATTGTCTAGAGCCAGTTGTATAGTAATGTTGTTGGCTTATGTTGCTTACTTGATCTTTCAACTCTGGACCCACCGCCAATTATTTGAGCCAGATAAGGAATTGGAGGTATACAATGATGATGTGGAAGAAGGTCCGGTGATTGGAATATGGAGCGCAATGGCTTGGTTGGTGGGTATGACCATTCTCATTGCTTTGTTGTCCGAATATGTGGTGGTCACAATTGAGGATGCATCAGAAACTTGGGGTTTATCAGTTGCGTTCCTAAGCATAATCTTGCTGCCACTAGTTGGAAATGCAGCTGAGCATGCAGCGGCTGTCATGTTTGCTTATAAGAACAAGTTGGATATAACTTTAGTTGTTGCTTTAGGATCTGCAACTCAAATAGCAATGTTTGTGGTTCCTCTCTGTGTAATTGTTGCATGGATTATGGGAATTCATATGGACCTCAATTTTAATATCCTTGAAACTGTCTCCCTTGCTCTTTCAATAATGGCTTCATCATCCATTTTACAGGATGGTACTTCTCACTACATGAAGGGATTAGTTCTGTCTCTCTTCTATATTGTCATTGCAACATGTTTCTTCTTAACCAATGATGTGGTCAATACCAATATTTCTGGATTGTCGAGACTCCAACTAAATGGACCACGATAG 1323 43.92 MDLEQETSIWQNGAVKGPLSHGRWVHNMSSSSLRKKSDLTLVSKVRFGFLRLLLVNLQEVILGTRIWFLFPAIPFAVLAHTFHFGRAWVFVLSLLGLAPLAERLSFLTEQISFFTGPTVGGLLNATCGNATELIIAIFALSKDKVELVKYSLLGSVLSNLLLVLGTSLFIGGIVNLRKQQTYDRRQAEVNTHMLLLALLCYSLPMLFHYVEESVDVAGAEGLRLSRASCIVMLLAYVAYLIFQLWTHRQLFEPDKELEVYNDDVEEGPVIGIWSAMAWLVGMTILIALLSEYVVVTIEDASETWGLSVAFLSIILLPLVGNAAEHAAAVMFAYKNKLDITLVVALGSATQIAMFVVPLCVIVAWIMGIHMDLNFNILETVSLALSIMASSSILQDGTSHYMKGLVLSLFYIVIATCFFLTNDVVNTNISGLSRLQLNGPR 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35491310 35514745 - Sed0000289.1 Sed02g0224 703892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0224 440 Gene3D - 117 256 IPR044880 -
Sed02g0224 440 Gene3D - 262 419 IPR044880 -
Sed02g0224 440 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 22 422 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
Sed02g0224 440 NCBIfam calcium/proton exchanger 71 418 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
Sed02g0224 440 FunFam Vacuolar cation/proton exchanger 263 419 - -
Sed02g0224 440 Pfam Sodium/calcium exchanger protein 275 418 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed02g0224 440 Pfam Sodium/calcium exchanger protein 87 245 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0224 Sed-Chr2:35491310 Sed03g2497 Sed-Chr3:30291415 9.40E-156 dispersed
Sed02g0224 Sed-Chr2:35491310 Sed06g2276 Sed-Chr6:46282696 1.90E-92 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0224 K07300 - csv:101213176 618.231