Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0239 ATGAGGCAAGATTACTACAATACCAAGGGAAGTTTGTGTATATTTGTATGCAATTTCTTTCTGATGTCTATGACCTCATGTCTTAGACATAAACAAACTCTTGAAAGTGAATCAGATCGATTGGCTTTACTTGACTTCAAAAATGGATTGTTGAGTGATCCACACAAAATCATGAGTTCTTGGAATGATTCCATGCATTTCTGTGACTGGGTTGGTGTTACTTGCAATACCACCAGTGGAAGAGTTCAAGTTTTGGACTTGGAAGCTCGCCATCTTGTAGGTTCAATATCAGCTTCTCTGGGTAATCTGACTCATCTCAGTGAAATAAATTTTGGAGACAACAACTTTCATGGATTAATTCCTCAAGAGTTTGGCCGGCTACTACAATTGCGCCATCTCAATTTGTCCTTCAATAACTTCAGCGGTGAGATTCCTGCCAATATAAGCCATTGCAATGAGCTTGTTTTTCTGGCATTCAGTTATAATGAGCTTGTTGGCCAAATTCCAAAGCAGTTTTCTACATTAACCAAGTTGAATCAACTACGGTTTAACCAGAACTACCTAACTGGATCCATTCCATCTTGGATAGGAAATTTGACTTCCATATTTAGATTGGAATTAGGCTATAACAATTTTCAGGGAAACATTCCTAACGAGCTCGGGCGCTTGTCCAAATTGTGGCTCTTAGCGGTTTATGTAAACAATTTGACAGGTACAGTGCCTCCTTCAATTTATAACATAACCTCTCTTTTTCATTTGTCGCTTACTCAAAACAATCTGAAAGGAACTCTACCACATAATATTGGACATACTCTTCCAAATCTTCGAGTTTTTGTTGCTGGTAGCAATGATTTTAGTGGGCCTATTCCCACATCCTTTTCTAATATCTCCAACCTTCAGAAATTAGATGTTTCTGAGAATAGTCTCACTGGAACGCTACCTGATGGCTTCGGGGCCTTAAAAGACTTGGTGTTGCTCAATTTTCATAATAACAAACTTGGAAGTGGAAAAATTGGCGACTTGCACTTCATTAGTTCCTTGGCTAATTGTACTAGTCTGATGGTTTTGGATTTAGCTATAAATCGTTTTGGAGGGGAATTTCCTTCATCTGTTGGCAACCTTTCAATCCAAATGACTGAGCTATTCTTGGGTGCAAATCTGTTAATTGGAAGAATTCCAGCAGAGATTGGAAACCTAGTTAACTTGAAATCTTTTGGAGTGGAAGATAACTCTTTAAATGGTAGTATCCCTTCAAATATTGAGAAGCTTCAGAACTTGGCATGGTTATCATTCAATTGGAATGAACTAAGTGGGCCAATTCCTTCCCAAATTGGTAACTTGTCTTCCCTTTATGAGCTCTTCATGAATAATAACAGACTTGAGGGAAGTATACCACCAAGCTTAGGACAATGTAAAAGGCTTCAAACTCTTAGCTTAGCTAGTAATAGCCTAAGTGGTCCAATACCAAAAGAAGTTATTGGTCTCTCTTCCCTTTCAAAATTTTTGTTCCTGACTAATAACTCACTTACTGGCCCCTTACCATACGAAGTGGGTCAATTAGTTAATTTAGCATATTTGGACGTATCAGAGAATAAATTATCAGGCAATATTCCCAGTAGTCTTGGTCAATGTATTCTCATGCTTTACTTGGGTTTAAGTAATAACCAATTTGAGGGAACAATTCCTCAAAATTTGAAAGAACTGAGAGGCTTAGAATATCTAGATCTCTCCAACAACAGCTTGTCAGGGAGAATTCCTCAATTTCTTTGTAGCTTTACGTTCCTCAAATCCCTTGATCTATCTTACAATAATTTTGATGGACAAGTGCCCAAAGAAGGAGTTTTTTCCAATACAACTGCCCTTCTAATTAAGGGAAACAAAAAATTATGTGGTGGTGTGAAAAAATTGTATTTACCTCGGTGCCCATCCAATCAAACACATTCATTTCATAAGTCTCGAGCACCCAATGTGCTAATCCCCATCGTATCCACGGTAACATTTGTTGTTATCCTTTTGAGCATAATTTTTGTCTGCTTTATGCTCAAGAAGTCGAGGAAAAGTGCTTCACCTCCATCTTCATCCAAGAATGTATTGCCACAAATTTCTTATTCGGAACTTAGTAGCTCAACTAATGGATTCTCTGAAGAAACTTTGATTGGTTCAGGTAGTTTTGGTTCTGTGTATAAAGGTATTCTTCCAAATGATGGTTTAGTCGTTGCCATCAAGGTTCTAAATCTTCAACAACAAGGTGCTTCAAAAAGTTTCATTCATGAGTGCAATGCTCTCGCTAGCATAAGACATCGAAATCTCTTGAAGATCATCACTTCTTGTTCTAGTATCGACGTACGAGGTGATGAATTCAAAGCTTTGGTATTTGATTTCATGTCCAATGGGAACCTTGATAGCTGGCTTCACTCCGTAAATAATGGTCCAAATCAAAGAAGGCTAAGTTTTATTCAGAGACTAGATATCGCTATTGGTATTGCAAGTGCATTAGATTATCTTCATAATGATTGTGAAACATCGATTGTTCATTGCGATCTAAAGCCTAGCAATGTATTGCTTAACGATGATATGGTAGCCCACATTGGAGATTTTGGATTAGCTAGATTCATCTTGGAAGGATCAAATCAAACTGATTTCAACCGAACTATGTCGGTTGCACTTAAAGGTTCTATCGGATATATCCCTCCAGAGTATGGCACTGGTGGGAAAGTTTCCATTGAAGGAGACATCTTCAGCTATGGAATACTGTTGTTGGAGATGATCATTGGAAAAAGACCGACCGACGAAACATTTGATAATGGAGTGGATATTCATATGTTCACTGCAATGGCGCTTCCTGAGGGTGCATTGAGCATTGTTGACAATTTTCTTATATCTGAAGAAACACGTCAAGAAGAAAAAGAGAATGGACACATGATACAAGAAATGGTTATAATGAACGAGCAAGATCGTACGAAATCCATGCCCAGATGGATGGAAGAATGTTTAATCTCATTAATGAGAATTGGCTTGGCCTGCTCCTCACCAATATCTAGTGAGAGAACATCCATGAAGGTCGTTGTCAATGAATTACAAGCAATTCGAAGATCTCATCTTAAGTTTATTACTTCCGCCAGATTTAACAAAACTTGCAGGTAA 3144 37.98 MRQDYYNTKGSLCIFVCNFFLMSMTSCLRHKQTLESESDRLALLDFKNGLLSDPHKIMSSWNDSMHFCDWVGVTCNTTSGRVQVLDLEARHLVGSISASLGNLTHLSEINFGDNNFHGLIPQEFGRLLQLRHLNLSFNNFSGEIPANISHCNELVFLAFSYNELVGQIPKQFSTLTKLNQLRFNQNYLTGSIPSWIGNLTSIFRLELGYNNFQGNIPNELGRLSKLWLLAVYVNNLTGTVPPSIYNITSLFHLSLTQNNLKGTLPHNIGHTLPNLRVFVAGSNDFSGPIPTSFSNISNLQKLDVSENSLTGTLPDGFGALKDLVLLNFHNNKLGSGKIGDLHFISSLANCTSLMVLDLAINRFGGEFPSSVGNLSIQMTELFLGANLLIGRIPAEIGNLVNLKSFGVEDNSLNGSIPSNIEKLQNLAWLSFNWNELSGPIPSQIGNLSSLYELFMNNNRLEGSIPPSLGQCKRLQTLSLASNSLSGPIPKEVIGLSSLSKFLFLTNNSLTGPLPYEVGQLVNLAYLDVSENKLSGNIPSSLGQCILMLYLGLSNNQFEGTIPQNLKELRGLEYLDLSNNSLSGRIPQFLCSFTFLKSLDLSYNNFDGQVPKEGVFSNTTALLIKGNKKLCGGVKKLYLPRCPSNQTHSFHKSRAPNVLIPIVSTVTFVVILLSIIFVCFMLKKSRKSASPPSSSKNVLPQISYSELSSSTNGFSEETLIGSGSFGSVYKGILPNDGLVVAIKVLNLQQQGASKSFIHECNALASIRHRNLLKIITSCSSIDVRGDEFKALVFDFMSNGNLDSWLHSVNNGPNQRRLSFIQRLDIAIGIASALDYLHNDCETSIVHCDLKPSNVLLNDDMVAHIGDFGLARFILEGSNQTDFNRTMSVALKGSIGYIPPEYGTGGKVSIEGDIFSYGILLLEMIIGKRPTDETFDNGVDIHMFTAMALPEGALSIVDNFLISEETRQEEKENGHMIQEMVIMNEQDRTKSMPRWMEECLISLMRIGLACSSPISSERTSMKVVVNELQAIRRSHLKFITSARFNKTCR 1047
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36701208 36717562 - Sed0021819.1 Sed02g0239 703907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0239 1047 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
Sed02g0239 1047 FunFam Piriformospora indica-insensitive protein 2 216 315 - -
Sed02g0239 1047 SUPERFAMILY Protein kinase-like (PK-like) 686 1026 IPR011009 -
Sed02g0239 1047 Gene3D Phosphorylase Kinase; domain 1 677 794 - -
Sed02g0239 1047 PANTHER OS04G0122200 PROTEIN 48 1029 IPR051809 -
Sed02g0239 1047 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 795 1038 - -
Sed02g0239 1047 ProSitePatterns Serine/Threonine protein kinases active-site signature. 843 855 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed02g0239 1047 Gene3D Ribonuclease Inhibitor 160 269 IPR032675 -
Sed02g0239 1047 Pfam Leucine Rich Repeat 129 151 IPR001611 GO:0005515(InterPro)
Sed02g0239 1047 Pfam Leucine Rich Repeat 473 492 IPR001611 GO:0005515(InterPro)
Sed02g0239 1047 Pfam Leucine Rich Repeat 177 199 IPR001611 GO:0005515(InterPro)
Sed02g0239 1047 Pfam Leucine Rich Repeat 522 544 IPR001611 GO:0005515(InterPro)
Sed02g0239 1047 Pfam Leucine Rich Repeat 298 320 IPR001611 GO:0005515(InterPro)
Sed02g0239 1047 Pfam Leucine Rich Repeat 449 471 IPR001611 GO:0005515(InterPro)
Sed02g0239 1047 Pfam Leucine Rich Repeat 595 611 IPR001611 GO:0005515(InterPro)
Sed02g0239 1047 Pfam Leucine Rich Repeat 571 591 IPR001611 GO:0005515(InterPro)
Sed02g0239 1047 FunFam LRR receptor-like serine/threonine-protein kinase EFR 339 647 - -
Sed02g0239 1047 Gene3D Ribonuclease Inhibitor 270 340 IPR032675 -
Sed02g0239 1047 Pfam Protein kinase domain 714 988 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g0239 1047 SMART serkin_6 713 979 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g0239 1047 Gene3D Transferase(Phosphotransferase) domain 1 795 1043 - -
Sed02g0239 1047 FunFam LRR receptor-like serine/threonine-protein kinase EFR 684 794 - -
Sed02g0239 1047 FunFam Leucine-rich repeat receptor-like protein kinase 36 194 - -
Sed02g0239 1047 Pfam Leucine rich repeat N-terminal domain 37 76 IPR013210 -
Sed02g0239 1047 ProSiteProfiles Protein kinase domain profile. 713 998 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g0239 1047 SMART LRR_typ_2 568 592 IPR003591 -
Sed02g0239 1047 SMART LRR_typ_2 175 199 IPR003591 -
Sed02g0239 1047 SMART LRR_typ_2 447 471 IPR003591 -
Sed02g0239 1047 SMART LRR_typ_2 296 320 IPR003591 -
Sed02g0239 1047 SMART LRR_typ_2 103 126 IPR003591 -
Sed02g0239 1047 SMART LRR_typ_2 127 151 IPR003591 -
Sed02g0239 1047 SMART LRR_typ_2 520 544 IPR003591 -
Sed02g0239 1047 SMART LRR_typ_2 247 271 IPR003591 -
Sed02g0239 1047 Gene3D Ribonuclease Inhibitor 38 153 IPR032675 -
Sed02g0239 1047 SUPERFAMILY RNI-like 252 612 - -
Sed02g0239 1047 SUPERFAMILY L domain-like 60 332 - -
Sed02g0239 1047 ProSitePatterns Protein kinases ATP-binding region signature. 719 742 IPR017441 GO:0005524(InterPro)
Sed02g0239 1047 Gene3D Ribonuclease Inhibitor 341 644 IPR032675 -
Sed02g0239 1047 PRINTS Leucine-rich repeat signature 299 312 - -
Sed02g0239 1047 PRINTS Leucine-rich repeat signature 568 581 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0236 Sed-Chr2:36481589 Sed02g0239 Sed-Chr2:36701208 4.20E-172 dispersed
Sed02g0239 Sed-Chr2:36701208 Sed02g0241 Sed-Chr2:36708836 0.00E+00 dispersed
Sed02g0238 Sed-Chr2:36647327 Sed02g0239 Sed-Chr2:36701208 1.40E-52 tandem
Sed02g0239 Sed-Chr2:36701208 Sed02g0240 Sed-Chr2:36701208 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78779 PF00069 Pkinase 1.50E-40 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0239 - - - 0.0