Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0256 ATGGGAGTGGCCAAATCTCCTAATAAGTGCAACACTGTTGGAGTTCAAGGCATTGCTTGGGCCTTTGGTGGCATGATCTTTGCTCTTGTTTATTGCACTGCTGGTATTTCAGGTGGTCACATAAATCCAGCCGTGACGTTCGGGCTATTACTGGCGAGAAAGCTCTCCCTAACAAGGGCAATTTTCTACATCATAATGCAGTGCATAGGCGCCATCGGTGGAGCCGCAGTCGTGAAAGCCTTCGAGAAGGGGCAATTTGAAAGGCTCGGAGGCGGAGCCAACACCGTCAATGCTGGCTATGCCGAAACACAAGGCCTCGGAGCTGAAATCATGGGCACATTTCTGCTTGTTTACACGGTCTTTTCCGCCACCGATGCAAAGCGAAACGCCAGAGATTCCCATGTTCCTATGTTGGCTCCTTTACCCATTGGATTCGCAGTGTTTTTGGTGCATTTGGCCACCATTCCGGTCACCGGAACCGGTATTAATCCGGCCAGAAGTCTCGGCGCCGCCCTTATTTATAACCGCCACCAAGCCTGGCATGACCATTGGGTGTTCTGGGCAGGGCCGTTGATCGGGTCAGCACTTGCAGCTCTGTACCATCAGACGGTGATCAGGGCGATACCATTCAAGTCTAAATGA 642 51.71 MGVAKSPNKCNTVGVQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAIFYIIMQCIGAIGGAAVVKAFEKGQFERLGGGANTVNAGYAETQGLGAEIMGTFLLVYTVFSATDAKRNARDSHVPMLAPLPIGFAVFLVHLATIPVTGTGINPARSLGAALIYNRHQAWHDHWVFWAGPLIGSALAALYHQTVIRAIPFKSK 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37672131 37677613 - Sed0018095.1 Sed02g0256 703924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0256 213 Gene3D Glycerol uptake facilitator protein. 1 212 IPR023271 -
Sed02g0256 213 FunFam Putative aquaporin PIP-type 7a 78 209 - -
Sed02g0256 213 PRINTS Major intrinsic protein family signature 108 126 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed02g0256 213 PRINTS Major intrinsic protein family signature 184 204 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed02g0256 213 PRINTS Major intrinsic protein family signature 144 166 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed02g0256 213 PRINTS Major intrinsic protein family signature 22 46 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed02g0256 213 PRINTS Major intrinsic protein family signature 59 78 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed02g0256 213 CDD MIP 14 204 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed02g0256 213 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 212 IPR034294 GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0009414(PANTHER)|GO:0009506(PANTHER)|GO:0015250(PANTHER)
Sed02g0256 213 SUPERFAMILY Aquaporin-like 11 205 IPR023271 -
Sed02g0256 213 Pfam Major intrinsic protein 10 201 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed02g0256 213 ProSitePatterns MIP family signature. 40 48 IPR022357 -
Sed02g0256 213 NCBIfam MIP family channel protein 10 201 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0256 Sed-Chr2:37672131 Sed07g2554 Sed-Chr7:41078724 6.10E-100 dispersed
Sed02g0256 Sed-Chr2:37672131 Sed04g3846 Sed-Chr4:46838222 2.70E-84 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0256 K09872 - rcu:8269391 366.696