Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0277 ATGGAGATCCTACCGAGCCTCGACGTTCCGGTTTTCATTGCTGTCGCTGCGGCCCTGCTAGCCATTGCTGCTGGTGCTGTTTTCCTCTTCTCCTCCACAAAACCAGCATCTAGAGGCTGCTTGGATCCTGAGAACTTCAAAGAGTTTAAGCTCATTAAGCGCACCAAGCTGAGCCATAATGTGGCGAGGTTCACTTTTGCACTTCCCAAGCCCGATTCAATTCTTGGTCTTCCTACTGGAAAGCATTTAAGTTGCAGGGGAAAAGATAGCAAAGGTGAAGAGGTTATTAGATCTTACACCCCTATTACTTTGGATTCTGATGTTGGATATTTTGAACTAGTCATAAAGATGTATCCCCAAGGAAGGATGTCGCATCATTTTCGAGAAATGCGTATCGGGGACCATCTTGCTGTAAAGGGACCAAAGGGAATTTTTAAGTATCAACCTGGACAAGTTCGAGCATTTGGAATGCTTGCTGGAGGCTCTGGAATTACACCTATGTACCAAGTCACTCGAGCTATATTAGAGAACCCGAACGACAAGACAAAAGTTCACCTTATTTACGCCAATGTTACACTTGAAGATATACTTTTAAAGGAAGAATTGGATCTTCTTGCCGAAAGATACCCTGACCGCTTCAAAGTCTACTATGTATTGAGCAAGCCTCCTAAAGTTTGGAATGGTGGCAGTGGCCATATCTCAAAGGAAATGATTCAAGCCCATTGCCCTGCACCTTCCTCTGACATTCAGATTCTACGATGCGGTCCGCCACCGATGAACAAGGCCATGGCTGCTCACCTTGATGCTCTTAAGTATGCACCTGAAATGCAGTTTCAATTTTAA 843 44.72 MEILPSLDVPVFIAVAAALLAIAAGAVFLFSSTKPASRGCLDPENFKEFKLIKRTKLSHNVARFTFALPKPDSILGLPTGKHLSCRGKDSKGEEVIRSYTPITLDSDVGYFELVIKMYPQGRMSHHFREMRIGDHLAVKGPKGIFKYQPGQVRAFGMLAGGSGITPMYQVTRAILENPNDKTKVHLIYANVTLEDILLKEELDLLAERYPDRFKVYYVLSKPPKVWNGGSGHISKEMIQAHCPAPSSDIQILRCGPPPMNKAMAAHLDALKYAPEMQFQF 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 38384357 38403603 + Sed0010585.1 Sed02g0277 703945

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0277 280 Gene3D - 139 280 IPR039261 -
Sed02g0277 280 Pfam Oxidoreductase NAD-binding domain 157 263 IPR001433 GO:0016491(InterPro)
Sed02g0277 280 PRINTS Cytochrome B5 reductase signature 156 175 - -
Sed02g0277 280 PRINTS Cytochrome B5 reductase signature 97 104 - -
Sed02g0277 280 PRINTS Cytochrome B5 reductase signature 75 86 - -
Sed02g0277 280 PRINTS Cytochrome B5 reductase signature 194 205 - -
Sed02g0277 280 PRINTS Cytochrome B5 reductase signature 250 258 - -
Sed02g0277 280 PRINTS Cytochrome B5 reductase signature 133 147 - -
Sed02g0277 280 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 44 148 IPR017927 GO:0016491(InterPro)
Sed02g0277 280 PANTHER NADH-CYTOCHROME B5 REDUCTASE 22 280 IPR001834 GO:0004128(PANTHER)|GO:0016491(InterPro)|GO:0022900(PANTHER)
Sed02g0277 280 FunFam NADH-cytochrome b5 reductase 138 280 - -
Sed02g0277 280 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 194 205 IPR001709 GO:0016491(InterPro)
Sed02g0277 280 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 156 175 IPR001709 GO:0016491(InterPro)
Sed02g0277 280 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 250 258 IPR001709 GO:0016491(InterPro)
Sed02g0277 280 SUPERFAMILY Riboflavin synthase domain-like 41 149 IPR017938 -
Sed02g0277 280 CDD cyt_b5_reduct_like 49 280 - -
Sed02g0277 280 Gene3D Translation factors 39 138 - -
Sed02g0277 280 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 136 276 IPR039261 -
Sed02g0277 280 Pfam Oxidoreductase FAD-binding domain 49 147 IPR008333 -
Sed02g0277 280 FunFam NADH-cytochrome b5 reductase 39 138 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0277 K00326 - - csv:101212931 469.544
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0277 Sed-Chr2:38384357 Sed03g2083 Sed-Chr3:14969593 2.20E-121 dispersed
Sed02g0277 Sed-Chr2:38384357 Sed10g1434 Sed-Chr10:30517212 7.10E-48 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed05g0386 . 1 134 NADPH P450 reductases AT5G53560 76.9 2.4e-57 219.2
Sed05g0385 . 1 134 NADPH P450 reductases AT5G53560 76.9 2.4e-57 219.2
Sed01g3465 . 1 134 NADPH P450 reductases AT5G53560 75.4 3.1e-57 218.8
Sed02g1490 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.9e-51 199.5
Sed12g0390 . 1 133 NADPH P450 reductases AT5G53560 67.7 2.5e-51 199.1
Sed04g2056 . 1 133 NADPH P450 reductases AT5G53560 61.7 9.3e-46 180.6
Sed05g0197 . 5 131 NADPH P450 reductases AT5G53560 65.4 1.2e-45 180.3
Sed02g1783 . 1 134 NADPH P450 reductases AT5G53560 56.0 4.5e-40 161.8
Sed01g3466 . 1 98 NADPH P450 reductases AT5G53560 73.5 5.5e-38 154.8
Sed05g0198 . 14 124 NADPH P450 reductases AT5G53560 65.8 7.1e-38 154.5
Sed12g0390 . 1 132 NADPH P450 reductases AT5G48810 64.2 1.4e-47 186.8
Sed02g1490 . 1 132 NADPH P450 reductases AT5G48810 63.4 1.8e-47 186.4
Sed04g2056 . 1 133 NADPH P450 reductases AT5G48810 58.5 3.1e-44 175.6
Sed01g3465 . 1 134 NADPH P450 reductases AT5G48810 58.1 7.0e-44 174.5
Sed05g0197 . 5 131 NADPH P450 reductases AT5G48810 62.0 9.1e-44 174.1
Sed05g0386 . 1 134 NADPH P450 reductases AT5G48810 59.6 2.6e-43 172.6
Sed05g0385 . 1 134 NADPH P450 reductases AT5G48810 59.6 2.6e-43 172.6
Sed02g1783 . 1 134 NADPH P450 reductases AT5G48810 52.2 2.8e-37 152.5
Sed12g0390 . 22 133 NADPH P450 reductases AT2G32720 84.8 1.3e-50 196.8
Sed02g1490 . 22 133 NADPH P450 reductases AT2G32720 83.0 2.1e-50 196.1
Sed04g2056 . 22 133 NADPH P450 reductases AT2G32720 76.8 5.4e-46 181.4
Sed05g0198 . 14 125 NADPH P450 reductases AT2G32720 70.5 1.8e-41 166.4
Sed05g0197 . 21 132 NADPH P450 reductases AT2G32720 69.6 1.5e-40 163.3
Sed05g0386 . 22 133 NADPH P450 reductases AT2G32720 63.4 9.3e-38 154.1
Sed05g0385 . 22 133 NADPH P450 reductases AT2G32720 63.4 9.3e-38 154.1
Sed01g3465 . 22 133 NADPH P450 reductases AT2G32720 63.4 1.2e-37 153.7
Sed03g2083 . 2 281 NADPH P450 reductases AT5G17770 79.3 1.8e-128 456.4
Sed02g0277 . 2 280 NADPH P450 reductases AT5G17770 73.1 9.1e-120 427.6
Sed05g1022 . 1 282 NADPH P450 reductases AT5G17770 68.9 1.2e-114 410.6
Sed05g0386 . 1 134 NADPH P450 reductases AT5G53560 76.9 2.4e-57 219.2
Sed05g0385 . 1 134 NADPH P450 reductases AT5G53560 76.9 2.4e-57 219.2
Sed01g3465 . 1 134 NADPH P450 reductases AT5G53560 75.4 3.1e-57 218.8
Sed02g1490 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.9e-51 199.5
Sed12g0390 . 1 133 NADPH P450 reductases AT5G53560 67.7 2.5e-51 199.1
Sed04g2056 . 1 133 NADPH P450 reductases AT5G53560 61.7 9.3e-46 180.6
Sed05g0197 . 5 131 NADPH P450 reductases AT5G53560 65.4 1.2e-45 180.3
Sed02g1783 . 1 134 NADPH P450 reductases AT5G53560 56.0 4.5e-40 161.8
Sed01g3466 . 1 98 NADPH P450 reductases AT5G53560 73.5 5.5e-38 154.8
Sed05g0198 . 14 124 NADPH P450 reductases AT5G53560 65.8 7.1e-38 154.5
Sed12g0390 . 1 132 NADPH P450 reductases AT5G48810 64.2 1.4e-47 186.8
Sed02g1490 . 1 132 NADPH P450 reductases AT5G48810 63.4 1.8e-47 186.4
Sed04g2056 . 1 133 NADPH P450 reductases AT5G48810 58.5 3.1e-44 175.6
Sed01g3465 . 1 134 NADPH P450 reductases AT5G48810 58.1 7.0e-44 174.5
Sed05g0197 . 5 131 NADPH P450 reductases AT5G48810 62.0 9.1e-44 174.1
Sed05g0386 . 1 134 NADPH P450 reductases AT5G48810 59.6 2.6e-43 172.6
Sed05g0385 . 1 134 NADPH P450 reductases AT5G48810 59.6 2.6e-43 172.6
Sed02g1783 . 1 134 NADPH P450 reductases AT5G48810 52.2 2.8e-37 152.5
Sed12g0390 . 22 133 NADPH P450 reductases AT2G32720 84.8 1.3e-50 196.8
Sed02g1490 . 22 133 NADPH P450 reductases AT2G32720 83.0 2.1e-50 196.1
Sed04g2056 . 22 133 NADPH P450 reductases AT2G32720 76.8 5.4e-46 181.4
Sed05g0198 . 14 125 NADPH P450 reductases AT2G32720 70.5 1.8e-41 166.4
Sed05g0197 . 21 132 NADPH P450 reductases AT2G32720 69.6 1.5e-40 163.3
Sed05g0386 . 22 133 NADPH P450 reductases AT2G32720 63.4 9.3e-38 154.1
Sed05g0385 . 22 133 NADPH P450 reductases AT2G32720 63.4 9.3e-38 154.1
Sed01g3465 . 22 133 NADPH P450 reductases AT2G32720 63.4 1.2e-37 153.7
Sed03g2083 . 2 281 NADPH P450 reductases AT5G17770 79.3 1.8e-128 456.4
Sed02g0277 . 2 280 NADPH P450 reductases AT5G17770 73.1 9.1e-120 427.6
Sed05g1022 . 1 282 NADPH P450 reductases AT5G17770 68.9 1.2e-114 410.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000880 3 3 2 3 3 2 4 3 2 3 3 3 4 3 3 4 3 4 4 2 3 2 2 3 2 1 1 3 5 3 86