Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0305 ATGAATAACCTGACTGTTGAAACAGAAGATGCCTTTTCCAGTTTTCTCGAGTTTGCTGCGAATGATGACATCGATGCCTTTAAGAGGTCAATAGAGCGCGACCCTTCTGGTATTGATGAGATTGGTTTGTGGTATGGCCGATTGCGAGGCTCAAAGCAGATGACTCATGAGCAGAGAACTCCTTTAATGGTTGCTGCTACTTATGGTAGCATTGAGGTTCTGAAGCTTATTCTTTCTCTTTCTTGTGCTGATGTGAACCGTGCTGTTGGCCTCGACAGAAGCACTGCCCTTCATTGTGCAGCCTCAGGTGGTGCTGCAAATGCTGTAGAAATTGTGAAGCGGCTCTTAGCCGCCGGTGCTGATCCAAATATGGTTGATGAAAATGGTCATCGACCTGTTGATGTGATTGTTTCCCCCCGAGGGCACGTGGAGTTTAAATCAATCCTTACAGAACTTCTTAAAGCAAATGGTTTGTCTGGTGAAGGAAATCTTGATGTTTTAACAGGTTGTAGGAATTCATATTCTCCTTACCCTGTGTCTCCTCGGAATGTCCCATCTACTGCATCGGAGTTCGTTTCTTCTCCAACAAAGACGAAACTGAGTGATTTTTCTATGTATTCTGCATCTGAGAAGAAAGAATACCCTGTTGATCTATCTCTTCCAGACATCAAGAATAGTATCTATTCGACTGATGAATTCCGAATGTATTCGTTCAAGATTCGACCCTGCTCACGGGCTTACTCTCATGATTGGACTGAGTGCCCCTTTGTCCACCCTGGAGAAAATGCTAGGAGGAGGGATCCAAGAAAGTTCCATTACAGCTGTGTACCCTGTCCTGAATTTCGGAAGGGCACTTGTCGGCGGGGAGATATGTGTGAATATGCTCATGGGGTGTTCGAGTGCTGGCTGCACCCAGCACAATATCGGACTCGCCTTTGCAAAGATGGCACAAGTTGCTCAAGGAGAGTTTGCTTCTTCGCACACATGACTGAGGAACTTCGACCACTTTATGTTTCGACTGGCTCTGCTGTTCCTTCACCACGTTCTTGTACTTCTGGGGCTTCTGCTATGGATTATAATACAGTCATGAACATTCTCCCTGGTTCCCCATCTTCGGTCCATGTGATGTCTCCGTCACCGTTCACTCCACCGATGTCTCCCTCTGCTAATGGCATGTCTCACTCATCTGTGGCTTGGTCTCAACCCAATGTTCCTGCCTTGCATCTTCCAGGAAGCAATATTCAATCCAGCCGCCTAAGATCTTCTTTGAGTGCAAGAGACATTCCTGTGGAGGACTTTGAGTATCTGAGTGATTTTGATCTGCAACAACAGCAGCTCCTCAATGACTTGAATTGTATTTCTCAGCCACCTTTAAGTTCAAATTCACTGAGCCGTTCCGGTCGGTTGAAAACTCTGACCCCTTCAAATCTCGACGATCTCTTCTCTGCTGAGAGTTCATCTCCAAGATACTCTGATCAAGCTTTGGCTTCCGCTGTTTTCTCCCCTACACACAAATCAGCAGTAATCAATCAATTTCAGCAGCAACAGAATATGTTATCACCAATCAATACGAATTTCTCTCCTAAAAATGGTGATCACCCTCTATTGCAGGCCCCTTATGGTGTTCCATCATCTGGGAGGATGTCTCCACGAAATCTGGAACCAATCTCTCCGATGGGCTCTCGGTTGTCCATGTTAGCCCAAAGAGAGAAACAGCAACAGTTTCGCAGCCTAAGCTCGCGAGAACTTGGTTCTAATTCTGCTTCTGTTGTTGGTTCCCCTGCAAGTTCTTGGTCTAGATGGGGACCATCTAATGGAACTCCTGATTGGGCAGTCAATGCAGATGAAATGGGTAATCTTCGGCGATCGTCGATGTTTGACCTCGGCAACAATGGTGAAGAGCCGGATTTATCATGGGTTCAATCACTTGTAAAAGAATCTCCGACTGAGATGAAAGAAAAGCAGGCTCATCCCAGTTCGGGTGGTGATAGTTTTGTATCTGCTGGTGAGAATTCTAACATCAACTCCCAAATGGAGTCGGTGGATCATGCTGCACTAGGAGCATGGCTTGAACAAATGCAGCTCGACCATCTCGTCGCGCAGCAAAACTGA 2112 46.21 MNNLTVETEDAFSSFLEFAANDDIDAFKRSIERDPSGIDEIGLWYGRLRGSKQMTHEQRTPLMVAATYGSIEVLKLILSLSCADVNRAVGLDRSTALHCAASGGAANAVEIVKRLLAAGADPNMVDENGHRPVDVIVSPRGHVEFKSILTELLKANGLSGEGNLDVLTGCRNSYSPYPVSPRNVPSTASEFVSSPTKTKLSDFSMYSASEKKEYPVDLSLPDIKNSIYSTDEFRMYSFKIRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPEFRKGTCRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCSRRVCFFAHMTEELRPLYVSTGSAVPSPRSCTSGASAMDYNTVMNILPGSPSSVHVMSPSPFTPPMSPSANGMSHSSVAWSQPNVPALHLPGSNIQSSRLRSSLSARDIPVEDFEYLSDFDLQQQQLLNDLNCISQPPLSSNSLSRSGRLKTLTPSNLDDLFSAESSSPRYSDQALASAVFSPTHKSAVINQFQQQQNMLSPINTNFSPKNGDHPLLQAPYGVPSSGRMSPRNLEPISPMGSRLSMLAQREKQQQFRSLSSRELGSNSASVVGSPASSWSRWGPSNGTPDWAVNADEMGNLRRSSMFDLGNNGEEPDLSWVQSLVKESPTEMKEKQAHPSSGGDSFVSAGENSNINSQMESVDHAALGAWLEQMQLDHLVAQQN 703
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 39351250 39355424 + Sed0025567.1 Sed02g0305 703973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0305 703 Pfam CCCH-type zinc finger 277 296 IPR041367 -
Sed02g0305 703 ProSiteProfiles Ankyrin repeat region circular profile. 92 127 - -
Sed02g0305 703 Gene3D - 273 335 - -
Sed02g0305 703 SMART ANK_2a 57 87 IPR002110 GO:0005515(InterPro)
Sed02g0305 703 SMART ANK_2a 92 124 IPR002110 GO:0005515(InterPro)
Sed02g0305 703 SMART c3hfinal6 272 298 IPR000571 GO:0046872(InterPro)
Sed02g0305 703 SMART c3hfinal6 307 330 IPR000571 GO:0046872(InterPro)
Sed02g0305 703 Gene3D - 9 148 IPR036770 -
Sed02g0305 703 ProSiteProfiles Zinc finger C3H1-type profile. 277 299 IPR000571 GO:0046872(InterPro)
Sed02g0305 703 MobiDBLite consensus disorder prediction 646 674 - -
Sed02g0305 703 Pfam Ankyrin repeats (3 copies) 55 126 IPR002110 GO:0005515(InterPro)
Sed02g0305 703 SUPERFAMILY Ankyrin repeat 6 151 IPR036770 -
Sed02g0305 703 PANTHER UNKEMPT FAMILY MEMBER 53 648 IPR045234 -
Sed02g0305 703 MobiDBLite consensus disorder prediction 570 604 - -
Sed02g0305 703 MobiDBLite consensus disorder prediction 660 674 - -
Sed02g0305 703 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515(InterPro)
Sed02g0305 703 FunFam Zinc finger CCCH domain-containing protein 66 230 298 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0305 Sed-Chr2:39351250 Sed04g2538 Sed-Chr4:38201111 5.10E-236 dispersed
Sed12g1226 Sed-Chr12:8602749 Sed02g0305 Sed-Chr2:39351250 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37494 PF12796 Ank_2 3.50E-09 CL0465 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0305 - - - 0.0