Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed02g0336 | ATGGATGCCATGGTAACCTCTTCCTATCAATTTTGGTGCTTTTGGCTCATCACTGCCCTCCTCCTTCATCTCTTCCTCAAAAAACATCTCTCAAAACCTAAATCCTCATCTCCAAACGGCAACGCACTACCCCCGAGCCCACCGGCCCTCCCATTCATCGGTCATCTCCACCTCCTCACTCCTGTTCTCGTTACCTCCTTCCAAACCTTAGCTCACCGCTACGGCCCCCTAATCGAGCTCCGACTCGGCGCATCAAAGTGCGTCATCGTCTCCAATGCCACAGTCGCCAAAGAAGTCCTCAAAACTCACGAACACAACTTCCTCTCCCGACCGGAGTTTGGTGCCTCAGAGCACTTCATCTACCGAGGGTCGAGATTCGTCATGGCCCCCTACGGACCCTATTGGCGATTCATGAAGAAGCTAACCATGACCCGACTCCTCTCCCTGCCGCAACTCGCAGTCGCCACCGAGATACGACACGACGAGGTGGCAAAGCTCGTGCAGAGAATAGAGGAAAATTCAAGAGAGAAGAAGCCATCAGATTTGAGATTGGAATTCACCACTTTGACAAACAACATCATATCAAGGATGCTTTTGAGCACAAGATGTTGTGATGGTAAAGATGAGGCTGAGGAGATTAAGGATTTGGTGTGGAGGATCAATAGGCTGGCTGGGAAGTTGAGTATGGGAGACATTTTGGGACCTTTGAAGGTTCTTGATTTCTCTGGAAATGGAAGAAAGTTCATGAGAACTATGAAGAGATTTGACAAGTTAGTGGAGAGGATAATGAAGGAGCATGAACAAAACAATAAGGTTGCCATTAATGGAGGTGATGTGGAGAGAAAAAGAGATTTGTTGGATATATTGTTGGAGATTTACAATGATCCAGATGCTGAGATGAAGATAACCAGAAAAGATGTCAAGTCTTTTCTGCTGGACTTATTCATGGCCGGGACCGACACGACGGCGACAGCAATACAATGGGCGATGGCGGAGCTCCTAAACAGTCCAACAGCAATGGATAACCTAAGAAAAGAAATAATCTCTGTGGTCGGAGACAAAACCCTAGTCCAAGAATCCGACTTCCCAAACCTCCCATATCTCCGGGCAGTGGTCAACGAAATCCTCCGCCTCCACCCCTCGGCTCCGATCATCATCCGAGAATGTTCGCAAGACTGCACCATCAACGGCTCGCTCCTCAAGGCCCAAACCCGAGTCTTGGTCAATGCGTACGCCGTCATGCGAGACCCCGAGTCGTGGTCCGACCCGGATAAGTTCCTACCGGAGAGGTTCTTGGATGGCTCGGCGGAGAATATCGGCGGGCATAGGATGGAGATGAAGGGGCAGAATTTTAGGTACATTCCGTTTGGGAGTGGGAAGAGGGGCTGCCCTGGCTCCTCTCTTGCTTTGTTGTTTCCATCATCATACCATTGTTTTTCAACCATGGGTGATTTTTCAGACTACCTTCTCCTTCTCTCTTTTTTGTTAGCCTCCTTCCTCTTCATCAAAGCCGTCCTCACTAGAACACGACCGAACGCATCTCACCTTCCACCGAGCCCACCGTGGCTGCCCGTGATCGGACACCTCCACCTCCTTGGCCGGATCCCTCACCAAGCTCTTCACAAATTGTCATGCCAATATGGACCTTTAATACATCTCTTCTTTGGCTCTAAGCCTTGTGTTATTGTCTCCTCATCAGAAATGGCTAAAGAGTTCCTCAAGACTAATGAATCCTCCTTTTTGAACCGACCCATTAGGCTCAACATAAACTATATCACTTATAACTCTCAAGACTTCACTTTTGCACCCTATGGACCCTATTGGAAGTTCTTGAAAAAGCTTTGCATGACCGAGCTCCTCGGCGGTCGGATTCTTGACGTCCACCGCCCCGTGAGGGACGAGGAGAGTAGGATGTTCGTGCAGCAGATTCATGATCGACATGTAGCTGGAGTAGCAATCGATGTTGGACTTGAGCTTTCGAGGTTGATGAACAACATAATATCGAGGATGACGTTGAGGAGACGGTGTTCCGAGGAGGAAGGTGAAGCGGAAGAAGTGGGGAAACTCGTAGGGGAGATGTGCGAGCTCGCCGGAGAACTCAACGTCGCCGACATGATTTGGTTCTGCAAGAGATTGGATTTACAAGGGTTTGGAAGAAGAGTTAGAGATGTGAGAAACAAGTATGATGTTATGATGGAGAAGATCATAAAGGAGCATGAAGATGATAGAAAGAGGGAAAAAGAAGATGGAGTTAAAGATTTGCTTGATATTCTACTTGACATTTATGAAGATCAAAGCTCAGAAATCAAACTCTCAAGAGATAATATCAAGGCTTTTGTTATGAACATATTCGGCGCCGGAACTGAAACAACAGCGGCGGCGACAGAGTGGGCATTAGCAGAGCTAATCAACAACCCATCCGCCATGGCCAAAGCAACTCAAGAACTCGACTCCGTCGTCGGAAAAACCCGCCTTCTCCTCGAGTCCGATCTCCCCAACCTCCCCTATCTCCAATCCATCGTCAAAGAAACTCTCCGCCTCCACCCCACGGCGCCGCTCATTGTCCGGCAGGCCACACAGCCCTGCTCCGTCGCCGGCTATCACATTCCGGCAGACACCCGCCTCCTCGTCAACGTCTGGGCCATTGCTCGTGACCCGGCCCATTGGCCCGACCCACTCCGCTTCCTACCCGAGAGGTTCTTAACCCGACCCGGCTCCGATCTCCAGAGCTTTGATCTCATGCCGTTTGGGAGCGGTCGTCGGAGCTGCCCCGGTGCCGCCATGGCTCTGTTGGCGATGCCGGCGGTGCTCGGGAGGATGATTCAGTGCTTTGAGTGGAAGGTGAACGGCGGCGGCGGCGACGTCGGTATGGAAGAGGGGCCTGGAATTTCTCTCCGGCGAGCTAGTTCGTTGGTTTTAGTCCCTGTGCCTAGGCTTCATCCTTTTCCTTGCATTTAG | 2958 | 50.51 | MDAMVTSSYQFWCFWLITALLLHLFLKKHLSKPKSSSPNGNALPPSPPALPFIGHLHLLTPVLVTSFQTLAHRYGPLIELRLGASKCVIVSNATVAKEVLKTHEHNFLSRPEFGASEHFIYRGSRFVMAPYGPYWRFMKKLTMTRLLSLPQLAVATEIRHDEVAKLVQRIEENSREKKPSDLRLEFTTLTNNIISRMLLSTRCCDGKDEAEEIKDLVWRINRLAGKLSMGDILGPLKVLDFSGNGRKFMRTMKRFDKLVERIMKEHEQNNKVAINGGDVERKRDLLDILLEIYNDPDAEMKITRKDVKSFLLDLFMAGTDTTATAIQWAMAELLNSPTAMDNLRKEIISVVGDKTLVQESDFPNLPYLRAVVNEILRLHPSAPIIIRECSQDCTINGSLLKAQTRVLVNAYAVMRDPESWSDPDKFLPERFLDGSAENIGGHRMEMKGQNFRYIPFGSGKRGCPGSSLALLFPSSYHCFSTMGDFSDYLLLLSFLLASFLFIKAVLTRTRPNASHLPPSPPWLPVIGHLHLLGRIPHQALHKLSCQYGPLIHLFFGSKPCVIVSSSEMAKEFLKTNESSFLNRPIRLNINYITYNSQDFTFAPYGPYWKFLKKLCMTELLGGRILDVHRPVRDEESRMFVQQIHDRHVAGVAIDVGLELSRLMNNIISRMTLRRRCSEEEGEAEEVGKLVGEMCELAGELNVADMIWFCKRLDLQGFGRRVRDVRNKYDVMMEKIIKEHEDDRKREKEDGVKDLLDILLDIYEDQSSEIKLSRDNIKAFVMNIFGAGTETTAAATEWALAELINNPSAMAKATQELDSVVGKTRLLLESDLPNLPYLQSIVKETLRLHPTAPLIVRQATQPCSVAGYHIPADTRLLVNVWAIARDPAHWPDPLRFLPERFLTRPGSDLQSFDLMPFGSGRRSCPGAAMALLAMPAVLGRMIQCFEWKVNGGGGDVGMEEGPGISLRRASSLVLVPVPRLHPFPCI | 985 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 39847477 | 39862455 | - | Sed0026240.1 | Sed02g0336 | 704004 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed02g0336 | 985 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 456 | 465 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed02g0336 | 985 | Pfam | Cytochrome P450 | 517 | 966 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g0336 | 985 | Pfam | Cytochrome P450 | 44 | 470 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g0336 | 985 | PANTHER | FLAVONOID 3'-MONOOXYGENASE-RELATED | 493 | 978 | IPR051103 | GO:0016020(PANTHER)|GO:0016709(PANTHER) | |
| Sed02g0336 | 985 | Gene3D | Cytochrome P450 | 29 | 472 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g0336 | 985 | Gene3D | Cytochrome P450 | 502 | 973 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g0336 | 985 | SUPERFAMILY | Cytochrome P450 | 517 | 978 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g0336 | 985 | PRINTS | E-class P450 group I signature | 662 | 680 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g0336 | 985 | PRINTS | E-class P450 group I signature | 838 | 856 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g0336 | 985 | PRINTS | E-class P450 group I signature | 913 | 923 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g0336 | 985 | PRINTS | E-class P450 group I signature | 923 | 946 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g0336 | 985 | PRINTS | E-class P450 group I signature | 544 | 563 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g0336 | 985 | PRINTS | E-class P450 group I signature | 878 | 902 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g0336 | 985 | PRINTS | E-class P450 group I signature | 568 | 589 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g0336 | 985 | PRINTS | E-class P450 group I signature | 795 | 821 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g0336 | 985 | PRINTS | E-class P450 group I signature | 775 | 792 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g0336 | 985 | PRINTS | P450 superfamily signature | 923 | 934 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g0336 | 985 | PRINTS | P450 superfamily signature | 317 | 334 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g0336 | 985 | PRINTS | P450 superfamily signature | 839 | 850 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g0336 | 985 | PRINTS | P450 superfamily signature | 914 | 923 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g0336 | 985 | FunFam | Cytochrome P450 family protein | 35 | 476 | - | - | |
| Sed02g0336 | 985 | SUPERFAMILY | Cytochrome P450 | 42 | 471 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g0336 | 985 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 916 | 925 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed02g0336 | 985 | FunFam | Cytochrome P450 family protein | 508 | 973 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed02g0336 | Sed-Chr2:39847477 | Sed10g0893 | Sed-Chr10:6759516 | 2.90E-173 | dispersed | |
| Sed02g0336 | Sed-Chr2:39847477 | Sed06g1698 | Sed-Chr6:41668565 | 9.90E-129 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed02g0336 | K24188 | - | csv:101205411 | 749.199 |