Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0339 ATGGCTTCTTCCAACATCAAAACCAACTCTGTCAGCGAACAAGCAAACGAGCTCGAAAAAAAACAACAACAACAACAGCAGCAACAACAACAACATCAACTTTTGCAAACTCCAAACTTTGTCATCCCCAAAAATTCCTCACCGTTCAACTTCCAAAATCAAAACCAAAACTTTCATGATAATCCTCAACAGCAACTACCCTTTTCCATGAATCTCCCTTCCATCTCTCAAAATTTCATAAGCAAAGATGGAGGAGGTGATGATTTGGGGGAATTGGATCGAGCCCTTTTTCTATTTCTCGATGGACAAGAACTCTTTACAACTACTACTCAAGATCAAAGACAGAGCTCAGGGATGAGACCACCGACGCTAAACATCTTCCCGTCGCAGCCAATGCATGTCGACCCATTGCCAACCAGAGCAAATACAACATTGATTAATGACCATGATGATTCAAAGATGAAAGCATTAGAGCCATCAAAAGATTTGGCCAACCAACACAGCAATGGAGCCACTCCATCTGGAGCAGCCCCAACCAAGCCCAATGCCAAGCCTCCAAAACGTGAGGCTAACAAGAAAGTGGTGACCTCAAGTTCAGAGCAAGAAGGACCCAAAACTCCAGACCCCAAGACTCTTAGAAGGCTGGCTCAAAATAGAGAGGCTGCAAGAAAAAGCAGGCTCAGAAAAAAGGCTTATGTTCAACAATTGGAGATGAGTAGAATGAAGCTCACACAGTTGGAGCAAGAGCTGCAAAGAACAAGAACTCAGGGCATGTTTATGGGAGGAGGAGCAACCATTTTAGGAGCTGACCAAGGACTTCTTCCTGGCCTCCATAACCTTAGCTCTGATGTTGCAATGTTCGACATCGAGTACGGGCGGTGGCAGGAAGAGCACCACCGGCTGATGTGCGAGCTTCGGGCAGCGGTGCAAGAGCATCTAGCAGAGAATGAGCTCCGATTGTTCGTCGACAACTGCCTTGCCCATTACGACGAAGTTCTACACCTGAAGATGATGGTGGCTAAGTCCGACGTCTTCCACCTTGTGTCGGGCATGTGGAAGACTCCGGCCGAGAGGTGTTTCATGTGGATGGGAGATTTCAGGCCCTCTGAACTCATTAAGATAGTAATGGGTGAAATAGAGCCGTTAACAGAGCAACAAATATTGAACATTTATGGATTGCAACAATCAACACAAGAGAGTGAAGAGGCATTGTCACAAGGGCTTGAAGCCCTAAACCAGTCCTTATCAGAAACCATCACCTCTGATTCATTGAGTGGCCCTCCCAATAATATGGCTAACTATATGGGGCACATGACCTTAGCCATCAACAAGCTCTCTAACCTTGAAGCCTTTGTAAGACAGGCAGACAATTTGAGACATCAAACACTTCATCGGCTGCTCCAAATTCTTACAAGCCGTCAAGCCGCAAGATGTTTGTTAGCCATTGCAGAGTATTTTCATCGGCTTCGAGCTCTCAGCTCATTGTGGCTGGCTCGGCCGAGCCAGGATTGA 1512 46.23 MASSNIKTNSVSEQANELEKKQQQQQQQQQQHQLLQTPNFVIPKNSSPFNFQNQNQNFHDNPQQQLPFSMNLPSISQNFISKDGGGDDLGELDRALFLFLDGQELFTTTTQDQRQSSGMRPPTLNIFPSQPMHVDPLPTRANTTLINDHDDSKMKALEPSKDLANQHSNGATPSGAAPTKPNAKPPKREANKKVVTSSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLEMSRMKLTQLEQELQRTRTQGMFMGGGATILGADQGLLPGLHNLSSDVAMFDIEYGRWQEEHHRLMCELRAAVQEHLAENELRLFVDNCLAHYDEVLHLKMMVAKSDVFHLVSGMWKTPAERCFMWMGDFRPSELIKIVMGEIEPLTEQQILNIYGLQQSTQESEEALSQGLEALNQSLSETITSDSLSGPPNNMANYMGHMTLAINKLSNLEAFVRQADNLRHQTLHRLLQILTSRQAARCLLAIAEYFHRLRALSSLWLARPSQD 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 39918160 39926495 - Sed0016563.1 Sed02g0339 704007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0339 503 Pfam Basic region leucine zipper 207 251 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed02g0339 503 CDD bZIP_HBP1b-like 210 262 - -
Sed02g0339 503 Gene3D - 209 258 - -
Sed02g0339 503 MobiDBLite consensus disorder prediction 163 213 - -
Sed02g0339 503 MobiDBLite consensus disorder prediction 109 145 - -
Sed02g0339 503 Coils Coil 229 256 - -
Sed02g0339 503 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 208 252 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed02g0339 503 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 213 228 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed02g0339 503 FunFam BZIP family transcription factor 209 258 - -
Sed02g0339 503 SUPERFAMILY Leucine zipper domain 210 253 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed02g0339 503 Coils Coil 8 35 - -
Sed02g0339 503 ProSiteProfiles DOG1 domain profile. 284 499 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed02g0339 503 MobiDBLite consensus disorder prediction 109 124 - -
Sed02g0339 503 Pfam Seed dormancy control 302 376 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed02g0339 503 SMART brlzneu 206 269 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed02g0339 503 PANTHER TRANSCRIPTION FACTOR TGA9 123 502 - -
Sed02g0339 503 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0339 Sed-Chr2:39918160 Sed12g1269 Sed-Chr12:9165658 4.30E-205 dispersed
Sed01g3180 Sed-Chr1:57940769 Sed02g0339 Sed-Chr2:39918160 5.30E-91 transposed
Sed12g1268 Sed-Chr12:9165658 Sed02g0339 Sed-Chr2:39918160 1.00E-222 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37504 PF14144 DOG1 1.60E-31 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0339 K14431 - csv:101204923 758.059