Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0342 ATGCTCCGACGGCGTTTGTTTGCGTATTTTAGTGTTCTTGTATATTGTACGTTTCTCACTTCGCTGGCTCGAGCGTTCACTGATCCGCCGGATGTTGCAGCTCTTCAGGATATGTACAGTGCTTTGAACTACCCACCAGAGCTTATAGGATGGAGAAATGAAAGTGGAGATCCTTGTGTGGAATCATGGACTGGAGTTTCTTGCTCCGGGTCATCTGTAATATACCTTAAACTCTGCGGACTTAACCTCACTGGGAATCTTGGAGAGAGGCTCAACGACCTCAACAATTTGAAACAACTGGATGTTAGCTCTAATAGACTTACGGGTGGGATTTCCCATAACTTGCCTCCTAATGTGACTCATATAAATATGGCATTCAACAATTTAAGTGAAAATATTCCATTTACTTTACCTTACATGGGAAGTCTCCGACATTTAAATCTGAGCCATAATGCTCTATCTGGTGTGATTGGAAATGTGTTCACTGGTTTACAGAGTTTGAGAGAGATGGATTTGTCATATAATAACTTCACTGGAGATTTGCCAAGTTCATTCGGTTCCCTGGCAAACATCACTAGACTGTTCTTGCAGAACAACAAATTTACTGGATCGGTTGCATACTTGTCTCTCCTCCCATTAATTGACCTGAACATCCAAGACAACTCTTTTAGTGGGATTATTCCAGAAAATTTTAGAAATATTCCGAATTTGTGGATTGGGGGAAATCGGTTTCATGCAGAAGTCAATTCTACACCCTGGGATTTCCCCCTGGAAAAAGAACCTGTGGTGAAAAACATCAGCGGTCATCCAACAACCAAGTCAAATGCCATCCAAAATTATCCCTCTCATGGTGTAATCGGGCATGAGAAGAAAATGCTTGGTCCTGGTGGAATAGTTCTTTTGGTTGGCGGGTTAGCGCTAGTTGTAACCTTTGCAGCTCTCTTTGTCTCATTCGCCATGAAGAAAGTGTATGAAAACAAAACAAATTTGAAGATTGAAGATACCTTACCCCGTTCCCTTCCTCTGAACAAAGCTGAAGATGGTTCGTCTACTGCACCAGAAGAACGCTCAAAAAGCTTGCCCCTGAATTCTATACTCAGGAGTGGTCCAAGGCCTTTACCTGTATTAAACCACACGAGAACTGAGAAAGCTTCTGGAAGAAGAGATTTATTGAAGAGATGCAAGCTTCCAGTGAGAACAAAAATGTACACTCTGGCAGAGCTTCAATTTAATACAAACAACTTTAGTCCAGAGAATCTTCTTGGAGAGGGATCTCTTGGTGCTGTTTATAGAGCTGAATTTCCTGATGGCCAAATTTTAGCTGTGAAATACATCAACATGGGAGGACTCTCTTTTACAGAAGATCAATTTATGGACGTGGTGTGGACTGCTTCCCGTTTGAGGCACCCGAACATTGTTACGCTGCTTGGATATTGTGTAGAGAATGGACAACATTTACTCGGATATGAATATATTCGAAATCTGACTCTCGACGACGCTTTGCACTGTGAAGCTTTCATGCCTCTGTCATGGACTGTCCGTCTCCAGATTGCACTTGGAGTTGCTAGGGCTTTAGATTATTTTCATACAAGTTTCTTCCCACCATTTGCTCACTGCAATCTGAAGGCTGCCAACATCTTACTTGATGAAGAACTGATACCTCGTATCTGTGATTGTGGGCTGTCTGTTTTGAGGCCACCTGTAACCAATAGAGTTGAAACGAAGGCTTCTGAGATTGACAATGGTGACAGAGGCTACCTTGCACCTGAACATGGTCATCCAGGATTTGATAACACCAGAAGTGATGTGTATTCTTTTGGAGTGTTGCTTTTGGAGCTTATCACAGGAAGAAAACCATTTGACAGTTCGAAACCGAGGAAAGAGCAATTGCTGGTGAAATGGGCTTCATCTCGACTTCATGACAACAAGAGTTTAGAAAAGATGGTAGATCCAGGCATTAAAGGAACATTTTCCTCCAAGGCCCTCTCTAGCTTTGTCGATATTATCTCCCTTTGTATACAGCCTGTGAGGGAGTTCCGACCACCAATGTCTGATATAGTAGAACACCTAACAAATCTTGAGAGAAAGATGGAGATGGCGAATCGTGCTGCAACCGAAGGAACTGAAACGGATCCTTTTGAGAAGTCTTTTCGTTCAACCAACACTGGCTTCATAAGTTCACCAACATACAGCTATTCTTCAACCTCAGCTTACTAG 2217 42.44 MLRRRLFAYFSVLVYCTFLTSLARAFTDPPDVAALQDMYSALNYPPELIGWRNESGDPCVESWTGVSCSGSSVIYLKLCGLNLTGNLGERLNDLNNLKQLDVSSNRLTGGISHNLPPNVTHINMAFNNLSENIPFTLPYMGSLRHLNLSHNALSGVIGNVFTGLQSLREMDLSYNNFTGDLPSSFGSLANITRLFLQNNKFTGSVAYLSLLPLIDLNIQDNSFSGIIPENFRNIPNLWIGGNRFHAEVNSTPWDFPLEKEPVVKNISGHPTTKSNAIQNYPSHGVIGHEKKMLGPGGIVLLVGGLALVVTFAALFVSFAMKKVYENKTNLKIEDTLPRSLPLNKAEDGSSTAPEERSKSLPLNSILRSGPRPLPVLNHTRTEKASGRRDLLKRCKLPVRTKMYTLAELQFNTNNFSPENLLGEGSLGAVYRAEFPDGQILAVKYINMGGLSFTEDQFMDVVWTASRLRHPNIVTLLGYCVENGQHLLGYEYIRNLTLDDALHCEAFMPLSWTVRLQIALGVARALDYFHTSFFPPFAHCNLKAANILLDEELIPRICDCGLSVLRPPVTNRVETKASEIDNGDRGYLAPEHGHPGFDNTRSDVYSFGVLLLELITGRKPFDSSKPRKEQLLVKWASSRLHDNKSLEKMVDPGIKGTFSSKALSSFVDIISLCIQPVREFRPPMSDIVEHLTNLERKMEMANRAATEGTETDPFEKSFRSTNTGFISSPTYSYSSTSAY 738
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 40075799 40081341 - Sed0012691.1 Sed02g0342 704010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0342 738 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 28 255 - -
Sed02g0342 738 Pfam Leucine rich repeat 142 201 IPR001611 GO:0005515(InterPro)
Sed02g0342 738 ProSiteProfiles Protein kinase domain profile. 415 692 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g0342 738 Gene3D Transferase(Phosphotransferase) domain 1 492 715 - -
Sed02g0342 738 SUPERFAMILY Protein kinase-like (PK-like) 394 691 IPR011009 -
Sed02g0342 738 Coils Coil 683 703 - -
Sed02g0342 738 MobiDBLite consensus disorder prediction 340 364 - -
Sed02g0342 738 Pfam Leucine Rich Repeat 213 233 IPR001611 GO:0005515(InterPro)
Sed02g0342 738 Pfam Leucine Rich Repeat 96 115 IPR001611 GO:0005515(InterPro)
Sed02g0342 738 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 380 491 - -
Sed02g0342 738 Pfam Leucine rich repeat N-terminal domain 29 69 IPR013210 -
Sed02g0342 738 SMART LRR_typ_2 164 187 IPR003591 -
Sed02g0342 738 SMART LRR_typ_2 94 121 IPR003591 -
Sed02g0342 738 SMART LRR_typ_2 140 163 IPR003591 -
Sed02g0342 738 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 165 694 IPR046959 -
Sed02g0342 738 Pfam Protein tyrosine and serine/threonine kinase 419 690 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed02g0342 738 Gene3D Ribonuclease Inhibitor 28 262 IPR032675 -
Sed02g0342 738 FunFam Leucine-rich repeat receptor-like protein kinase 492 701 - -
Sed02g0342 738 SUPERFAMILY L domain-like 27 238 - -
Sed02g0342 738 Gene3D Phosphorylase Kinase; domain 1 378 491 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0342 Sed-Chr2:40075799 Sed08g1942 Sed-Chr8:33820667 2.10E-107 dispersed
Sed12g1265 Sed-Chr12:9102774 Sed02g0342 Sed-Chr2:40075799 6.40E-178 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78786 PF07714 PK_Tyr_Ser-Thr 2.30E-32 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0342 - - - 0.0