Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed02g0342 | ATGCTCCGACGGCGTTTGTTTGCGTATTTTAGTGTTCTTGTATATTGTACGTTTCTCACTTCGCTGGCTCGAGCGTTCACTGATCCGCCGGATGTTGCAGCTCTTCAGGATATGTACAGTGCTTTGAACTACCCACCAGAGCTTATAGGATGGAGAAATGAAAGTGGAGATCCTTGTGTGGAATCATGGACTGGAGTTTCTTGCTCCGGGTCATCTGTAATATACCTTAAACTCTGCGGACTTAACCTCACTGGGAATCTTGGAGAGAGGCTCAACGACCTCAACAATTTGAAACAACTGGATGTTAGCTCTAATAGACTTACGGGTGGGATTTCCCATAACTTGCCTCCTAATGTGACTCATATAAATATGGCATTCAACAATTTAAGTGAAAATATTCCATTTACTTTACCTTACATGGGAAGTCTCCGACATTTAAATCTGAGCCATAATGCTCTATCTGGTGTGATTGGAAATGTGTTCACTGGTTTACAGAGTTTGAGAGAGATGGATTTGTCATATAATAACTTCACTGGAGATTTGCCAAGTTCATTCGGTTCCCTGGCAAACATCACTAGACTGTTCTTGCAGAACAACAAATTTACTGGATCGGTTGCATACTTGTCTCTCCTCCCATTAATTGACCTGAACATCCAAGACAACTCTTTTAGTGGGATTATTCCAGAAAATTTTAGAAATATTCCGAATTTGTGGATTGGGGGAAATCGGTTTCATGCAGAAGTCAATTCTACACCCTGGGATTTCCCCCTGGAAAAAGAACCTGTGGTGAAAAACATCAGCGGTCATCCAACAACCAAGTCAAATGCCATCCAAAATTATCCCTCTCATGGTGTAATCGGGCATGAGAAGAAAATGCTTGGTCCTGGTGGAATAGTTCTTTTGGTTGGCGGGTTAGCGCTAGTTGTAACCTTTGCAGCTCTCTTTGTCTCATTCGCCATGAAGAAAGTGTATGAAAACAAAACAAATTTGAAGATTGAAGATACCTTACCCCGTTCCCTTCCTCTGAACAAAGCTGAAGATGGTTCGTCTACTGCACCAGAAGAACGCTCAAAAAGCTTGCCCCTGAATTCTATACTCAGGAGTGGTCCAAGGCCTTTACCTGTATTAAACCACACGAGAACTGAGAAAGCTTCTGGAAGAAGAGATTTATTGAAGAGATGCAAGCTTCCAGTGAGAACAAAAATGTACACTCTGGCAGAGCTTCAATTTAATACAAACAACTTTAGTCCAGAGAATCTTCTTGGAGAGGGATCTCTTGGTGCTGTTTATAGAGCTGAATTTCCTGATGGCCAAATTTTAGCTGTGAAATACATCAACATGGGAGGACTCTCTTTTACAGAAGATCAATTTATGGACGTGGTGTGGACTGCTTCCCGTTTGAGGCACCCGAACATTGTTACGCTGCTTGGATATTGTGTAGAGAATGGACAACATTTACTCGGATATGAATATATTCGAAATCTGACTCTCGACGACGCTTTGCACTGTGAAGCTTTCATGCCTCTGTCATGGACTGTCCGTCTCCAGATTGCACTTGGAGTTGCTAGGGCTTTAGATTATTTTCATACAAGTTTCTTCCCACCATTTGCTCACTGCAATCTGAAGGCTGCCAACATCTTACTTGATGAAGAACTGATACCTCGTATCTGTGATTGTGGGCTGTCTGTTTTGAGGCCACCTGTAACCAATAGAGTTGAAACGAAGGCTTCTGAGATTGACAATGGTGACAGAGGCTACCTTGCACCTGAACATGGTCATCCAGGATTTGATAACACCAGAAGTGATGTGTATTCTTTTGGAGTGTTGCTTTTGGAGCTTATCACAGGAAGAAAACCATTTGACAGTTCGAAACCGAGGAAAGAGCAATTGCTGGTGAAATGGGCTTCATCTCGACTTCATGACAACAAGAGTTTAGAAAAGATGGTAGATCCAGGCATTAAAGGAACATTTTCCTCCAAGGCCCTCTCTAGCTTTGTCGATATTATCTCCCTTTGTATACAGCCTGTGAGGGAGTTCCGACCACCAATGTCTGATATAGTAGAACACCTAACAAATCTTGAGAGAAAGATGGAGATGGCGAATCGTGCTGCAACCGAAGGAACTGAAACGGATCCTTTTGAGAAGTCTTTTCGTTCAACCAACACTGGCTTCATAAGTTCACCAACATACAGCTATTCTTCAACCTCAGCTTACTAG | 2217 | 42.44 | MLRRRLFAYFSVLVYCTFLTSLARAFTDPPDVAALQDMYSALNYPPELIGWRNESGDPCVESWTGVSCSGSSVIYLKLCGLNLTGNLGERLNDLNNLKQLDVSSNRLTGGISHNLPPNVTHINMAFNNLSENIPFTLPYMGSLRHLNLSHNALSGVIGNVFTGLQSLREMDLSYNNFTGDLPSSFGSLANITRLFLQNNKFTGSVAYLSLLPLIDLNIQDNSFSGIIPENFRNIPNLWIGGNRFHAEVNSTPWDFPLEKEPVVKNISGHPTTKSNAIQNYPSHGVIGHEKKMLGPGGIVLLVGGLALVVTFAALFVSFAMKKVYENKTNLKIEDTLPRSLPLNKAEDGSSTAPEERSKSLPLNSILRSGPRPLPVLNHTRTEKASGRRDLLKRCKLPVRTKMYTLAELQFNTNNFSPENLLGEGSLGAVYRAEFPDGQILAVKYINMGGLSFTEDQFMDVVWTASRLRHPNIVTLLGYCVENGQHLLGYEYIRNLTLDDALHCEAFMPLSWTVRLQIALGVARALDYFHTSFFPPFAHCNLKAANILLDEELIPRICDCGLSVLRPPVTNRVETKASEIDNGDRGYLAPEHGHPGFDNTRSDVYSFGVLLLELITGRKPFDSSKPRKEQLLVKWASSRLHDNKSLEKMVDPGIKGTFSSKALSSFVDIISLCIQPVREFRPPMSDIVEHLTNLERKMEMANRAATEGTETDPFEKSFRSTNTGFISSPTYSYSSTSAY | 738 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 40075799 | 40081341 | - | Sed0012691.1 | Sed02g0342 | 704010 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed02g0342 | 738 | FunFam | protein STRUBBELIG-RECEPTOR FAMILY 3 | 28 | 255 | - | - | |
Sed02g0342 | 738 | Pfam | Leucine rich repeat | 142 | 201 | IPR001611 | GO:0005515(InterPro) | |
Sed02g0342 | 738 | ProSiteProfiles | Protein kinase domain profile. | 415 | 692 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed02g0342 | 738 | Gene3D | Transferase(Phosphotransferase) domain 1 | 492 | 715 | - | - | |
Sed02g0342 | 738 | SUPERFAMILY | Protein kinase-like (PK-like) | 394 | 691 | IPR011009 | - | |
Sed02g0342 | 738 | Coils | Coil | 683 | 703 | - | - | |
Sed02g0342 | 738 | MobiDBLite | consensus disorder prediction | 340 | 364 | - | - | |
Sed02g0342 | 738 | Pfam | Leucine Rich Repeat | 213 | 233 | IPR001611 | GO:0005515(InterPro) | |
Sed02g0342 | 738 | Pfam | Leucine Rich Repeat | 96 | 115 | IPR001611 | GO:0005515(InterPro) | |
Sed02g0342 | 738 | FunFam | Protein STRUBBELIG-RECEPTOR FAMILY 8 | 380 | 491 | - | - | |
Sed02g0342 | 738 | Pfam | Leucine rich repeat N-terminal domain | 29 | 69 | IPR013210 | - | |
Sed02g0342 | 738 | SMART | LRR_typ_2 | 164 | 187 | IPR003591 | - | |
Sed02g0342 | 738 | SMART | LRR_typ_2 | 94 | 121 | IPR003591 | - | |
Sed02g0342 | 738 | SMART | LRR_typ_2 | 140 | 163 | IPR003591 | - | |
Sed02g0342 | 738 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 | 165 | 694 | IPR046959 | - | |
Sed02g0342 | 738 | Pfam | Protein tyrosine and serine/threonine kinase | 419 | 690 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed02g0342 | 738 | Gene3D | Ribonuclease Inhibitor | 28 | 262 | IPR032675 | - | |
Sed02g0342 | 738 | FunFam | Leucine-rich repeat receptor-like protein kinase | 492 | 701 | - | - | |
Sed02g0342 | 738 | SUPERFAMILY | L domain-like | 27 | 238 | - | - | |
Sed02g0342 | 738 | Gene3D | Phosphorylase Kinase; domain 1 | 378 | 491 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g0342 | Sed-Chr2:40075799 | Sed08g1942 | Sed-Chr8:33820667 | 2.10E-107 | dispersed | |
Sed12g1265 | Sed-Chr12:9102774 | Sed02g0342 | Sed-Chr2:40075799 | 6.40E-178 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78786 | PF07714 | PK_Tyr_Ser-Thr | 2.30E-32 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed02g0342 | - | - | - | 0.0 |