Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0344 ATGGGAATGGATTGCTCTTCTTTGACTGAGTCTGGTGGGTCTTCATCAGTTGAATCATCATCACTCAATGGCCTCAAATTTGGACACAAAATTTACTTTGAAGATGTGGGTATTGGGGAACTTCCCAAACCAGGTGTGGGTTCTTTCTCAACAACACCCACCAAGAAACCTAGGGCTGTTCAAGGAGTGGCTCAGCCCCCCAGGTGTCAGGTTGAAGGCTGTAAGTTAGATCTTAGTGATGCTAAGGCTTACTATTCCAGACACAAAGTCTGTACTATGCACTCTAAATTCCCTAAGGTCATTGTTGCTGGTCTTGAGCAAAGGTTTTGCCAGCAGTGTAGCAGATTTCATCAGCTTCCTGAATTTGATCAAGGAAAACGTAGTTGTCGCAGGCGTTTAGCTGGTCATAATGAGCGCCGCAGGAAGCCTCCTCCAGGGTCACTATTATCCACTCGTTATGGTCGCTTCTCTTCGTCTATCTTTGAAAACGGGAGCAGAGCTGGAAGCTTTCTAATGGATTTCAGTGCATACCAGAAACCAACTGGAAAAGATGTATGGTTGTCGTCGGGTGCGAAAGCATCTGAACGTGTACCGGGAAACCAAAGCATCACTGCCATGGGGAAATACAATCCTCTTCCTTGGCATAGCAACTCTGAGAACAGTCCATCTGAACTTTTCCTGCCAGTTTCTGCAGGTGGGACCAGTTTTTCTGGTCCTGGGAATCCTTCTGGAGAATGTATCAATGGAGTCACTGACTCTTCTTGTGCTCTCTCTCTTCTGTCAAACCAAACATGGGGCTCCAGAAACCGAACATCGGAAGCTCTCGAGGCTAATGCCTTGTCGAGTGCTCAAGCAACATCAGCTCAGGCTGCTACCAGCCACTTCCCAACCATGTCATGGGACTTCAAGGGGATTTCAGGTCCCATTAGCAGCAGCTCCTTGGACCTGACATCTGATCTGGGTCTGAATCATCAAGTTTCACAGGCACTTACCAGTTCTTTCTCTGGTGATGTCCAGTTCCCTCATCAAGCTAGGAGGCCATACACGGAACTCGGGCATTCGGGCGCCTTCGACTCCACCTCCCAGCATCATCTGCACTGGTCACTCTGA 1110 48.38 MGMDCSSLTESGGSSSVESSSLNGLKFGHKIYFEDVGIGELPKPGVGSFSTTPTKKPRAVQGVAQPPRCQVEGCKLDLSDAKAYYSRHKVCTMHSKFPKVIVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPPPGSLLSTRYGRFSSSIFENGSRAGSFLMDFSAYQKPTGKDVWLSSGAKASERVPGNQSITAMGKYNPLPWHSNSENSPSELFLPVSAGGTSFSGPGNPSGECINGVTDSSCALSLLSNQTWGSRNRTSEALEANALSSAQATSAQAATSHFPTMSWDFKGISGPISSSSLDLTSDLGLNHQVSQALTSSFSGDVQFPHQARRPYTELGHSGAFDSTSQHHLHWSL 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 40091161 40095990 - Sed0003293.1 Sed02g0344 704012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0344 369 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 14 329 IPR044817 GO:0003677(InterPro)
Sed02g0344 369 MobiDBLite consensus disorder prediction 132 151 - -
Sed02g0344 369 MobiDBLite consensus disorder prediction 1 20 - -
Sed02g0344 369 FunFam Squamosa promoter-binding-like protein 14 60 130 - -
Sed02g0344 369 Pfam SBP domain 69 142 IPR004333 GO:0003677(InterPro)
Sed02g0344 369 Gene3D - 60 130 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed02g0344 369 ProSiteProfiles Zinc finger SBP-type profile. 66 143 IPR004333 GO:0003677(InterPro)
Sed02g0344 369 SUPERFAMILY SBT domain 67 147 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0344 Sed-Chr2:40091161 Sed08g0290 Sed-Chr8:1716242 5.90E-34 dispersed
Sed02g0344 Sed-Chr2:40091161 Sed02g0345 Sed-Chr2:40091161 8.00E-116 tandem
Sed02g1808 Sed-Chr2:52639457 Sed02g0344 Sed-Chr2:40091161 2.90E-30 transposed
Sed12g1264 Sed-Chr12:9093993 Sed02g0344 Sed-Chr2:40091161 2.40E-166 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37505 PF03110 SBP 3.10E-32 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0344 - - - 0.0