Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed02g0344 | ATGGGAATGGATTGCTCTTCTTTGACTGAGTCTGGTGGGTCTTCATCAGTTGAATCATCATCACTCAATGGCCTCAAATTTGGACACAAAATTTACTTTGAAGATGTGGGTATTGGGGAACTTCCCAAACCAGGTGTGGGTTCTTTCTCAACAACACCCACCAAGAAACCTAGGGCTGTTCAAGGAGTGGCTCAGCCCCCCAGGTGTCAGGTTGAAGGCTGTAAGTTAGATCTTAGTGATGCTAAGGCTTACTATTCCAGACACAAAGTCTGTACTATGCACTCTAAATTCCCTAAGGTCATTGTTGCTGGTCTTGAGCAAAGGTTTTGCCAGCAGTGTAGCAGATTTCATCAGCTTCCTGAATTTGATCAAGGAAAACGTAGTTGTCGCAGGCGTTTAGCTGGTCATAATGAGCGCCGCAGGAAGCCTCCTCCAGGGTCACTATTATCCACTCGTTATGGTCGCTTCTCTTCGTCTATCTTTGAAAACGGGAGCAGAGCTGGAAGCTTTCTAATGGATTTCAGTGCATACCAGAAACCAACTGGAAAAGATGTATGGTTGTCGTCGGGTGCGAAAGCATCTGAACGTGTACCGGGAAACCAAAGCATCACTGCCATGGGGAAATACAATCCTCTTCCTTGGCATAGCAACTCTGAGAACAGTCCATCTGAACTTTTCCTGCCAGTTTCTGCAGGTGGGACCAGTTTTTCTGGTCCTGGGAATCCTTCTGGAGAATGTATCAATGGAGTCACTGACTCTTCTTGTGCTCTCTCTCTTCTGTCAAACCAAACATGGGGCTCCAGAAACCGAACATCGGAAGCTCTCGAGGCTAATGCCTTGTCGAGTGCTCAAGCAACATCAGCTCAGGCTGCTACCAGCCACTTCCCAACCATGTCATGGGACTTCAAGGGGATTTCAGGTCCCATTAGCAGCAGCTCCTTGGACCTGACATCTGATCTGGGTCTGAATCATCAAGTTTCACAGGCACTTACCAGTTCTTTCTCTGGTGATGTCCAGTTCCCTCATCAAGCTAGGAGGCCATACACGGAACTCGGGCATTCGGGCGCCTTCGACTCCACCTCCCAGCATCATCTGCACTGGTCACTCTGA | 1110 | 48.38 | MGMDCSSLTESGGSSSVESSSLNGLKFGHKIYFEDVGIGELPKPGVGSFSTTPTKKPRAVQGVAQPPRCQVEGCKLDLSDAKAYYSRHKVCTMHSKFPKVIVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPPPGSLLSTRYGRFSSSIFENGSRAGSFLMDFSAYQKPTGKDVWLSSGAKASERVPGNQSITAMGKYNPLPWHSNSENSPSELFLPVSAGGTSFSGPGNPSGECINGVTDSSCALSLLSNQTWGSRNRTSEALEANALSSAQATSAQAATSHFPTMSWDFKGISGPISSSSLDLTSDLGLNHQVSQALTSSFSGDVQFPHQARRPYTELGHSGAFDSTSQHHLHWSL | 369 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 40091161 | 40095990 | - | Sed0003293.1 | Sed02g0344 | 704012 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed02g0344 | 369 | PANTHER | SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 | 14 | 329 | IPR044817 | GO:0003677(InterPro) | |
Sed02g0344 | 369 | MobiDBLite | consensus disorder prediction | 132 | 151 | - | - | |
Sed02g0344 | 369 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Sed02g0344 | 369 | FunFam | Squamosa promoter-binding-like protein 14 | 60 | 130 | - | - | |
Sed02g0344 | 369 | Pfam | SBP domain | 69 | 142 | IPR004333 | GO:0003677(InterPro) | |
Sed02g0344 | 369 | Gene3D | - | 60 | 130 | IPR036893 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Sed02g0344 | 369 | ProSiteProfiles | Zinc finger SBP-type profile. | 66 | 143 | IPR004333 | GO:0003677(InterPro) | |
Sed02g0344 | 369 | SUPERFAMILY | SBT domain | 67 | 147 | IPR036893 | GO:0003677(InterPro)|GO:0005634(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g0344 | Sed-Chr2:40091161 | Sed08g0290 | Sed-Chr8:1716242 | 5.90E-34 | dispersed | |
Sed02g0344 | Sed-Chr2:40091161 | Sed02g0345 | Sed-Chr2:40091161 | 8.00E-116 | tandem | |
Sed02g1808 | Sed-Chr2:52639457 | Sed02g0344 | Sed-Chr2:40091161 | 2.90E-30 | transposed | |
Sed12g1264 | Sed-Chr12:9093993 | Sed02g0344 | Sed-Chr2:40091161 | 2.40E-166 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37505 | PF03110 | SBP | 3.10E-32 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed02g0344 | - | - | - | 0.0 |