Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0344 ATGGGAATGGATTGCTCTTCTTTGACTGAGTCTGGTGGGTCTTCATCAGTTGAATCATCATCACTCAATGGCCTCAAATTTGGACACAAAATTTACTTTGAAGATGTGGGTATTGGGGAACTTCCCAAACCAGGTGTGGGTTCTTTCTCAACAACACCCACCAAGAAACCTAGGGCTGTTCAAGGAGTGGCTCAGCCCCCCAGGTGTCAGGTTGAAGGCTGTAAGTTAGATCTTAGTGATGCTAAGGCTTACTATTCCAGACACAAAGTCTGTACTATGCACTCTAAATTCCCTAAGGTCATTGTTGCTGGTCTTGAGCAAAGGTTTTGCCAGCAGTGTAGCAGATTTCATCAGCTTCCTGAATTTGATCAAGGAAAACGTAGTTGTCGCAGGCGTTTAGCTGGTCATAATGAGCGCCGCAGGAAGCCTCCTCCAGGGTCACTATTATCCACTCGTTATGGTCGCTTCTCTTCGTCTATCTTTGAAAACGGGAGCAGAGCTGGAAGCTTTCTAATGGATTTCAGTGCATACCAGAAACCAACTGGAAAAGATGTATGGTTGTCGTCGGGTGCGAAAGCATCTGAACGTGTACCGGGAAACCAAAGCATCACTGCCATGGGGAAATACAATCCTCTTCCTTGGCATAGCAACTCTGAGAACAGTCCATCTGAACTTTTCCTGCCAGTTTCTGCAGGTGGGACCAGTTTTTCTGGTCCTGGGAATCCTTCTGGAGAATGTATCAATGGAGTCACTGACTCTTCTTGTGCTCTCTCTCTTCTGTCAAACCAAACATGGGGCTCCAGAAACCGAACATCGGAAGCTCTCGAGGCTAATGCCTTGTCGAGTGCTCAAGCAACATCAGCTCAGGCTGCTACCAGCCACTTCCCAACCATGTCATGGGACTTCAAGGGGATTTCAGGTCCCATTAGCAGCAGCTCCTTGGACCTGACATCTGATCTGGGTCTGAATCATCAAGTTTCACAGGCACTTACCAGTTCTTTCTCTGGTGATGTCCAGTTCCCTCATCAAGCTAGGAGGCCATACACGGAACTCGGGCATTCGGGCGCCTTCGACTCCACCTCCCAGCATCATCTGCACTGGTCACTCTGA 1110 48.38 MGMDCSSLTESGGSSSVESSSLNGLKFGHKIYFEDVGIGELPKPGVGSFSTTPTKKPRAVQGVAQPPRCQVEGCKLDLSDAKAYYSRHKVCTMHSKFPKVIVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPPPGSLLSTRYGRFSSSIFENGSRAGSFLMDFSAYQKPTGKDVWLSSGAKASERVPGNQSITAMGKYNPLPWHSNSENSPSELFLPVSAGGTSFSGPGNPSGECINGVTDSSCALSLLSNQTWGSRNRTSEALEANALSSAQATSAQAATSHFPTMSWDFKGISGPISSSSLDLTSDLGLNHQVSQALTSSFSGDVQFPHQARRPYTELGHSGAFDSTSQHHLHWSL 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 40091161 40095990 - Sed0003293.1 Sed02g0344 704012

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0344 369 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 14 329 IPR044817 GO:0003677(InterPro)
Sed02g0344 369 MobiDBLite consensus disorder prediction 132 151 - -
Sed02g0344 369 MobiDBLite consensus disorder prediction 1 20 - -
Sed02g0344 369 FunFam Squamosa promoter-binding-like protein 14 60 130 - -
Sed02g0344 369 Pfam SBP domain 69 142 IPR004333 GO:0003677(InterPro)
Sed02g0344 369 Gene3D - 60 130 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed02g0344 369 ProSiteProfiles Zinc finger SBP-type profile. 66 143 IPR004333 GO:0003677(InterPro)
Sed02g0344 369 SUPERFAMILY SBT domain 67 147 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0344 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0344 Sed-Chr2:40091161 Sed08g0290 Sed-Chr8:1716242 5.90E-34 dispersed
Sed02g0344 Sed-Chr2:40091161 Sed02g0345 Sed-Chr2:40091161 8.00E-116 tandem
Sed02g1808 Sed-Chr2:52639457 Sed02g0344 Sed-Chr2:40091161 2.90E-30 transposed
Sed12g1264 Sed-Chr12:9093993 Sed02g0344 Sed-Chr2:40091161 2.40E-166 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed05g1290 . 181 1014 SBP-box Gene Family AT2G47070 55.2 3.6e-240 828.9
Sed06g1210 . 178 1013 SBP-box Gene Family AT2G47070 55.4 7.6e-238 821.2
Sed05g1290 . 25 1014 SBP-box Gene Family AT3G60030 53.8 1.6e-274 943.3
Sed06g1210 . 25 1013 SBP-box Gene Family AT3G60030 53.9 2.9e-271 932.6
Sed09g0380 . 15 149 SBP-box Gene Family AT5G50570 58.1 1.3e-38 158.3
Sed09g0381 . 15 149 SBP-box Gene Family AT5G50570 58.1 1.3e-38 158.3
Sed02g0344 . 2 146 SBP-box Gene Family AT5G43270 54.6 1.4e-36 151.8
Sed05g1290 . 181 1014 SBP-box Gene Family AT2G47070 55.2 3.6e-240 828.9
Sed06g1210 . 178 1013 SBP-box Gene Family AT2G47070 55.4 7.6e-238 821.2
Sed02g0344 . 2 146 SBP-box Gene Family AT5G43270 54.6 1.4e-36 151.8
Sed05g1290 . 25 1014 SBP-box Gene Family AT3G60030 53.8 1.6e-274 943.3
Sed06g1210 . 25 1013 SBP-box Gene Family AT3G60030 53.9 2.9e-271 932.6
Sed09g0380 . 15 149 SBP-box Gene Family AT5G50570 58.1 1.3e-38 158.3
Sed09g0381 . 15 149 SBP-box Gene Family AT5G50570 58.1 1.3e-38 158.3
Sed09g0380 . 15 149 SBP-box Gene Family AT5G50670 58.1 1.3e-38 158.3
Sed09g0381 . 15 149 SBP-box Gene Family AT5G50670 58.1 1.3e-38 158.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003140 4 1 3 3 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 3 2 2 2 1 1 3 1 1 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37505 PF03110 SBP 3.10E-32 No_clan Sed TF