Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0366 ATGTGTTGGTGGCTGGCAAGGATGGCATCGGCTTGTTGGAAACCATTGAGACGATATGCGCGTATGAACAAGGATGACGATCTTCCTGAAGAGGATTGTTCTTTACAGGATGCTCTGTTGTGGAGCAGAGACCTTGAAAAACACTCTTATGGGGAGTTTTCTTTTGCTGTGGTTCAGGCTAATGAGGTGATTGAGGATCATAGTCAGGTCGAGACTGGCTGTGACGCCACTTTTGTTGGCGTCTATGATGGCCATGGTGGCCCTGATGCTTCTCGCTTTGTCTCTCATCACCTTTTCAACCATCTGATCATAGGGCTTGCTCAGGAAAATGGAACCATAACCGAAGATATCATCCCAAGTGCATTTTCTGCAACCGAGGAAGGGTTTCTTACTCTTGTTCGCCGGTCATGGGGAATAAAACCAACAATGGCAGCAATGGGTTCTTGTTGCCTGATGGGAGTTATCTGGAGAGGTACACTGTACCTTGGTAATGTTGGTGATTCCCGGGCCGTTATTGGTTCTTTAGGTAAATCTAATAAGATAGTTGCAGAACAGTTGACAAGGGATCACAATGCAAGTATTGAAGAGGTTAGACAAGAACTCAAGTCCTTGCATCCCGATGACTCGCATATCGTTGTTATGAAGCATGGAGTGTGGCGTATAAAAGGCATAATTCAGGTTTCCAGATCGATAGGCGACGTGTATTTGAAAAGGCCAGAGTTCTCTCTTGATCCATCCTTCCCACGATTCCACCTTGCAGAGCCTCTTCGACGGCCTGTTCTTTCTGCCGAACCATCGTTAAGCACAAGAGTTCCACAACCTAAAGACAAATTTCTCATATTTGCATCTGATGGCCTTTGGGAGCATCTATCAAATCAACAAGCTGTTGAGATTGTGTATAATAGTCCACGTGAAGGAATCGCCAAAAGACTTGTCAAAACAGCATTAACCGAGGCTGCAAGGAAGAGGGAGATGCGATACGATGATCTTAAGAAGCTCGAAAAAGGAACTCGACGGTTCTTTCACGACGATATCACAGTTGTCGTTATCTTTCTGGATCATGAGTTGCAAGGGAAGAAGGCACATGTACCAGAATTATCTATTCGTGGGTTCACCGACACGGTTGGAACATCGAATTTCAACCTTGTTGGAAGGTCTGTTGGCTGA 1167 45.42 MCWWLARMASACWKPLRRYARMNKDDDLPEEDCSLQDALLWSRDLEKHSYGEFSFAVVQANEVIEDHSQVETGCDATFVGVYDGHGGPDASRFVSHHLFNHLIIGLAQENGTITEDIIPSAFSATEEGFLTLVRRSWGIKPTMAAMGSCCLMGVIWRGTLYLGNVGDSRAVIGSLGKSNKIVAEQLTRDHNASIEEVRQELKSLHPDDSHIVVMKHGVWRIKGIIQVSRSIGDVYLKRPEFSLDPSFPRFHLAEPLRRPVLSAEPSLSTRVPQPKDKFLIFASDGLWEHLSNQQAVEIVYNSPREGIAKRLVKTALTEAARKREMRYDDLKKLEKGTRRFFHDDITVVVIFLDHELQGKKAHVPELSIRGFTDTVGTSNFNLVGRSVG 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 40498529 40502206 + Sed0018453.1 Sed02g0366 704034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0366 388 ProSitePatterns PPM-type phosphatase domain signature. 78 86 IPR000222 GO:0043169(InterPro)
Sed02g0366 388 Pfam Protein phosphatase 2C 76 321 IPR001932 -
Sed02g0366 388 ProSiteProfiles PPM-type phosphatase domain profile. 52 352 IPR001932 -
Sed02g0366 388 SMART PP2C_4 46 350 IPR001932 -
Sed02g0366 388 FunFam Probable protein phosphatase 2C 42 43 360 - -
Sed02g0366 388 SUPERFAMILY PP2C-like 57 353 IPR036457 -
Sed02g0366 388 CDD PP2Cc 50 352 IPR001932 -
Sed02g0366 388 PANTHER PROTEIN PHOSPHATASE 43 351 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed02g0366 388 Gene3D - 34 362 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0366 Sed-Chr2:40498529 Sed05g3510 Sed-Chr5:43766552 5.60E-112 dispersed
Sed12g1246 Sed-Chr12:8908618 Sed02g0366 Sed-Chr2:40498529 9.30E-184 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0366 K01102 - csv:101222146 682.559