Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0369 ATGGAGTTGGCTTTGAGCCTTGGTGATGCTCCCAATTCCAATAAGCCTTTTGGGTTTTTCTCTAAACCTTCTAATAATCATAACCCAATTTCTTCTTCTTCTTCTTCTCTCATGGCTTTGGGGTTTTGTGTTGGGTTGGGCCATGATTCTGGTTCGGTCCATGACGATGAAGACGATGATGACGACGACGATGATGATGATGAAAAAACCGTTCCTCCCGGTTCGGGATCCGGGTTGAACCCACCGGTTCAGCTGGATCTTCTCCCTTTGGCTCCTGTCCCTCGTTCTTCTCACCTTCGATTTTCATGGCTTTCTGATCGCTTGATGCCAGAACTGGGTTGTTCAGAGGGGACAATGATACCGGCGGAGGAGACCGAAGAGAGGACGGGGGCGGTCGGGACAGCGGGGTCGTCTCCGAAGAGTACGGTGTCGTGTTTGCAGATAGATTTAGGAGGATCAAGAATTATGAGCAAGAGATCGTTAATATCAGACATGGAACCAATGGAGACTGAAAGAGTTTCGTGCAGAAATATGAGTGACGATGAGGAAAATATTGGGAGTGCTCGCAAAAAGCTTAGGCTTTCTAAAGATCAATCGGCTTTTCTTGAAGAAAGTTTCAAAGAACATAGCACTCTCAATCCTAAGCAAAAGCTAGCATTAGCCAAGCAGCTAAACCTCAGACCTAGGCAGGTGGAAGTTTGGTTTCAAAACAGAAGAGCAAGGACAAAGTTGAAGCAGACAGAAGTAGATTGTGAGTATTTAAGGAGATGTTGTGAGACATTGACAGAAGAGAATAGAAGATTACAGAAGGAGCTTCAAGAATTAAGAGCCTTAAAAACTTCTCAGCCCTTTTATATGCACCTTCCAGCCACCACTCTCACCATGTGCCCGTCATGCGAGCGCGTCGTTACCTCAGCTCCCGCTGCCTCCGTCACCACCACCACCACCACTGTCCCCGCCCCGACCCCGCCCTCTCTTTGCCTCGCAAACAAGCCGAGGATCTTGCCATTTCCTCCCTTGCACCAAGCTGCTTCATGA 1038 48.07 MELALSLGDAPNSNKPFGFFSKPSNNHNPISSSSSSLMALGFCVGLGHDSGSVHDDEDDDDDDDDDDEKTVPPGSGSGLNPPVQLDLLPLAPVPRSSHLRFSWLSDRLMPELGCSEGTMIPAEETEERTGAVGTAGSSPKSTVSCLQIDLGGSRIMSKRSLISDMEPMETERVSCRNMSDDEENIGSARKKLRLSKDQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLRRCCETLTEENRRLQKELQELRALKTSQPFYMHLPATTLTMCPSCERVVTSAPAASVTTTTTTVPAPTPPSLCLANKPRILPFPPLHQAAS 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 40525870 40530173 - Sed0000626.1 Sed02g0369 704037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0369 345 Coils Coil 251 281 - -
Sed02g0369 345 MobiDBLite consensus disorder prediction 1 33 - -
Sed02g0369 345 SMART HOX_1 187 249 IPR001356 GO:0003677(InterPro)
Sed02g0369 345 SUPERFAMILY Homeodomain-like 188 254 IPR009057 -
Sed02g0369 345 Gene3D - 193 243 - -
Sed02g0369 345 CDD homeodomain 189 246 IPR001356 GO:0003677(InterPro)
Sed02g0369 345 SMART halz 245 288 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed02g0369 345 FunFam Homeobox-leucine zipper protein 18 174 250 - -
Sed02g0369 345 MobiDBLite consensus disorder prediction 48 88 - -
Sed02g0369 345 ProSiteProfiles 'Homeobox' domain profile. 185 245 IPR001356 GO:0003677(InterPro)
Sed02g0369 345 MobiDBLite consensus disorder prediction 17 33 - -
Sed02g0369 345 CDD bZIP 238 277 - -
Sed02g0369 345 ProSitePatterns 'Homeobox' domain signature. 220 243 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed02g0369 345 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 40 315 IPR050762 -
Sed02g0369 345 MobiDBLite consensus disorder prediction 54 69 - -
Sed02g0369 345 Pfam Homeobox associated leucine zipper 245 279 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed02g0369 345 Pfam Homeodomain 189 243 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0369 Sed-Chr2:40525870 Sed12g1277 Sed-Chr12:9306669 7.40E-63 dispersed
Sed12g1276 Sed-Chr12:9306669 Sed02g0369 Sed-Chr2:40525870 1.70E-109 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37508 PF00046 Homeodomain 1.20E-15 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0369 K09338 - csv:101222778 369.007