Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed02g0369 | ATGGAGTTGGCTTTGAGCCTTGGTGATGCTCCCAATTCCAATAAGCCTTTTGGGTTTTTCTCTAAACCTTCTAATAATCATAACCCAATTTCTTCTTCTTCTTCTTCTCTCATGGCTTTGGGGTTTTGTGTTGGGTTGGGCCATGATTCTGGTTCGGTCCATGACGATGAAGACGATGATGACGACGACGATGATGATGATGAAAAAACCGTTCCTCCCGGTTCGGGATCCGGGTTGAACCCACCGGTTCAGCTGGATCTTCTCCCTTTGGCTCCTGTCCCTCGTTCTTCTCACCTTCGATTTTCATGGCTTTCTGATCGCTTGATGCCAGAACTGGGTTGTTCAGAGGGGACAATGATACCGGCGGAGGAGACCGAAGAGAGGACGGGGGCGGTCGGGACAGCGGGGTCGTCTCCGAAGAGTACGGTGTCGTGTTTGCAGATAGATTTAGGAGGATCAAGAATTATGAGCAAGAGATCGTTAATATCAGACATGGAACCAATGGAGACTGAAAGAGTTTCGTGCAGAAATATGAGTGACGATGAGGAAAATATTGGGAGTGCTCGCAAAAAGCTTAGGCTTTCTAAAGATCAATCGGCTTTTCTTGAAGAAAGTTTCAAAGAACATAGCACTCTCAATCCTAAGCAAAAGCTAGCATTAGCCAAGCAGCTAAACCTCAGACCTAGGCAGGTGGAAGTTTGGTTTCAAAACAGAAGAGCAAGGACAAAGTTGAAGCAGACAGAAGTAGATTGTGAGTATTTAAGGAGATGTTGTGAGACATTGACAGAAGAGAATAGAAGATTACAGAAGGAGCTTCAAGAATTAAGAGCCTTAAAAACTTCTCAGCCCTTTTATATGCACCTTCCAGCCACCACTCTCACCATGTGCCCGTCATGCGAGCGCGTCGTTACCTCAGCTCCCGCTGCCTCCGTCACCACCACCACCACCACTGTCCCCGCCCCGACCCCGCCCTCTCTTTGCCTCGCAAACAAGCCGAGGATCTTGCCATTTCCTCCCTTGCACCAAGCTGCTTCATGA | 1038 | 48.07 | MELALSLGDAPNSNKPFGFFSKPSNNHNPISSSSSSLMALGFCVGLGHDSGSVHDDEDDDDDDDDDDEKTVPPGSGSGLNPPVQLDLLPLAPVPRSSHLRFSWLSDRLMPELGCSEGTMIPAEETEERTGAVGTAGSSPKSTVSCLQIDLGGSRIMSKRSLISDMEPMETERVSCRNMSDDEENIGSARKKLRLSKDQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLRRCCETLTEENRRLQKELQELRALKTSQPFYMHLPATTLTMCPSCERVVTSAPAASVTTTTTTVPAPTPPSLCLANKPRILPFPPLHQAAS | 345 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 40525870 | 40530173 | - | Sed0000626.1 | Sed02g0369 | 704037 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed02g0369 | 345 | Coils | Coil | 251 | 281 | - | - | |
Sed02g0369 | 345 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
Sed02g0369 | 345 | SMART | HOX_1 | 187 | 249 | IPR001356 | GO:0003677(InterPro) | |
Sed02g0369 | 345 | SUPERFAMILY | Homeodomain-like | 188 | 254 | IPR009057 | - | |
Sed02g0369 | 345 | Gene3D | - | 193 | 243 | - | - | |
Sed02g0369 | 345 | CDD | homeodomain | 189 | 246 | IPR001356 | GO:0003677(InterPro) | |
Sed02g0369 | 345 | SMART | halz | 245 | 288 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed02g0369 | 345 | FunFam | Homeobox-leucine zipper protein 18 | 174 | 250 | - | - | |
Sed02g0369 | 345 | MobiDBLite | consensus disorder prediction | 48 | 88 | - | - | |
Sed02g0369 | 345 | ProSiteProfiles | 'Homeobox' domain profile. | 185 | 245 | IPR001356 | GO:0003677(InterPro) | |
Sed02g0369 | 345 | MobiDBLite | consensus disorder prediction | 17 | 33 | - | - | |
Sed02g0369 | 345 | CDD | bZIP | 238 | 277 | - | - | |
Sed02g0369 | 345 | ProSitePatterns | 'Homeobox' domain signature. | 220 | 243 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Sed02g0369 | 345 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 | 40 | 315 | IPR050762 | - | |
Sed02g0369 | 345 | MobiDBLite | consensus disorder prediction | 54 | 69 | - | - | |
Sed02g0369 | 345 | Pfam | Homeobox associated leucine zipper | 245 | 279 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed02g0369 | 345 | Pfam | Homeodomain | 189 | 243 | IPR001356 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g0369 | Sed-Chr2:40525870 | Sed12g1277 | Sed-Chr12:9306669 | 7.40E-63 | dispersed | |
Sed12g1276 | Sed-Chr12:9306669 | Sed02g0369 | Sed-Chr2:40525870 | 1.70E-109 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37508 | PF00046 | Homeodomain | 1.20E-15 | CL0123 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed02g0369 | K09338 | - | csv:101222778 | 369.007 |