Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0370 ATGGGTGACGAAATCTTTGATGCAATGAACCTTGACTTGAATCTGGGTCCTGTTCCGGAGCCGGTTTCAAATTCGGTTCTAAATGAAGATGTGAGTTTAGCTGATTTGACAGAGGATCCTGTTCATCGATTTGGAGAAGCTATCAGGGTTAGGACCAGGCATCGATGGAGAAGGCGACAAGCCCAATTTCCATCTGAAACTCAAAATATTTCATTGGAATTCAGTGAAATTATGGTCAATTCAGGCAATGGTAATTCATTACAGCCATTACAGGCTGGTGAAGGTAGTATTACTGCTGAGGAAAGGAAAAATGAGTCTGGGAAAACATGTGAGATCAACAATGAAGCCTTGGAAGATGAAAAGGAAGAGAATAAGAGTGATGTTGAAAAGGGCAGTGACTCTGATGGGAGTTTCTTTGATTGTAATATATGTCTTGACTTGGCTAGGGACCCTGTTGTAACTTGTTGCGGTCATCTATACTGCTGGCCGTGCCTTTATCGATGGTTACATCTACATTCGGATGCCAAGGAATGCCCTGTATGTAAAGGAGAGGTTACTATGAAGAATGTGACTCCAATTTACGGGCGTGGTAGCAACACCCCTGTGACAGAGGAGGATGCTGCACTTAAGATTCCTCTAAGGCCCCATGCTCGGAAGGTTGAGACTTTGAGACAAACCATCCAGAGGACTGCATTTAGTTTCCCAGTGGAGGAGATGATTCGTCGATTGGGAAACCGATTTGATTTCAATCGTGACCTAGACCAACCTCCGGAGCAAGACAGTTCACACGAAACATTTAGTAGATCTCCAACCTTGTTGAATAGGCTCTTATCATCGAGAGGAATTCGTAGAGAACAAATTTCATTGCCCCCTCCTGATGATGTAGGAGATTTAGAACTCCCTGATGTGTCTGGCACTGAGGCAGGGGAAACCCGTCTTCAATCTCTCCCAGTGCTTCGATCATTACTACAACGGACACGAGTTTCTAATCTTACCTCTGCATTTAATGCTGCTGATAGGCTTCCAGAAGGGTTTTTGTATACCGACCCGCTCATTTCTAGAATTCAAGAGCAGCCTCCGCCTCCTCCATCTGTCGAGGATAGAGATTCTTTCTCTAGCATTGCTGCTGTGATCAATTCAGAGAGTCAAATCGACACTGCTGTAGAAATCGATTCCATGGTCTCCATTTCAACATCATCCTCCAGAAGAAGAAATGATTCCTTACAGGTTTCTGATGTAGACAGTGGAAACTCTCGGGCACCCAGACGGAGAAGATTGGCTTGA 1284 44.55 MGDEIFDAMNLDLNLGPVPEPVSNSVLNEDVSLADLTEDPVHRFGEAIRVRTRHRWRRRQAQFPSETQNISLEFSEIMVNSGNGNSLQPLQAGEGSITAEERKNESGKTCEINNEALEDEKEENKSDVEKGSDSDGSFFDCNICLDLARDPVVTCCGHLYCWPCLYRWLHLHSDAKECPVCKGEVTMKNVTPIYGRGSNTPVTEEDAALKIPLRPHARKVETLRQTIQRTAFSFPVEEMIRRLGNRFDFNRDLDQPPEQDSSHETFSRSPTLLNRLLSSRGIRREQISLPPPDDVGDLELPDVSGTEAGETRLQSLPVLRSLLQRTRVSNLTSAFNAADRLPEGFLYTDPLISRIQEQPPPPPSVEDRDSFSSIAAVINSESQIDTAVEIDSMVSISTSSSRRRNDSLQVSDVDSGNSRAPRRRRLA 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 40561630 40564135 - Sed0011641.1 Sed02g0370 704038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0370 427 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 106 367 IPR045103 GO:0005783(InterPro)|GO:0006511(PANTHER)|GO:0006511(InterPro)|GO:0044390(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER)|GO:0071712(PANTHER)
Sed02g0370 427 CDD RING-HC_RNF5-like 139 182 - -
Sed02g0370 427 MobiDBLite consensus disorder prediction 250 270 - -
Sed02g0370 427 MobiDBLite consensus disorder prediction 396 427 - -
Sed02g0370 427 Pfam RING-type zinc-finger 141 179 IPR027370 -
Sed02g0370 427 SMART ring_2 141 181 IPR001841 -
Sed02g0370 427 MobiDBLite consensus disorder prediction 85 133 - -
Sed02g0370 427 ProSitePatterns Zinc finger RING-type signature. 156 165 IPR017907 -
Sed02g0370 427 FunFam Zinc finger family protein 122 195 - -
Sed02g0370 427 ProSiteProfiles Zinc finger RING-type profile. 141 182 IPR001841 -
Sed02g0370 427 SUPERFAMILY RING/U-box 137 194 - -
Sed02g0370 427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 201 IPR013083 -
Sed02g0370 427 MobiDBLite consensus disorder prediction 98 133 - -
Sed02g0370 427 MobiDBLite consensus disorder prediction 396 416 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0370 Sed-Chr2:40561630 Sed12g1275 Sed-Chr12:9287199 3.90E-199 dispersed
Sed02g0370 Sed-Chr2:40561630 Sed02g0371 Sed-Chr2:40561630 3.40E-243 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0370 K10666 - csv:101220497 734.176