Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed02g0370 | ATGGGTGACGAAATCTTTGATGCAATGAACCTTGACTTGAATCTGGGTCCTGTTCCGGAGCCGGTTTCAAATTCGGTTCTAAATGAAGATGTGAGTTTAGCTGATTTGACAGAGGATCCTGTTCATCGATTTGGAGAAGCTATCAGGGTTAGGACCAGGCATCGATGGAGAAGGCGACAAGCCCAATTTCCATCTGAAACTCAAAATATTTCATTGGAATTCAGTGAAATTATGGTCAATTCAGGCAATGGTAATTCATTACAGCCATTACAGGCTGGTGAAGGTAGTATTACTGCTGAGGAAAGGAAAAATGAGTCTGGGAAAACATGTGAGATCAACAATGAAGCCTTGGAAGATGAAAAGGAAGAGAATAAGAGTGATGTTGAAAAGGGCAGTGACTCTGATGGGAGTTTCTTTGATTGTAATATATGTCTTGACTTGGCTAGGGACCCTGTTGTAACTTGTTGCGGTCATCTATACTGCTGGCCGTGCCTTTATCGATGGTTACATCTACATTCGGATGCCAAGGAATGCCCTGTATGTAAAGGAGAGGTTACTATGAAGAATGTGACTCCAATTTACGGGCGTGGTAGCAACACCCCTGTGACAGAGGAGGATGCTGCACTTAAGATTCCTCTAAGGCCCCATGCTCGGAAGGTTGAGACTTTGAGACAAACCATCCAGAGGACTGCATTTAGTTTCCCAGTGGAGGAGATGATTCGTCGATTGGGAAACCGATTTGATTTCAATCGTGACCTAGACCAACCTCCGGAGCAAGACAGTTCACACGAAACATTTAGTAGATCTCCAACCTTGTTGAATAGGCTCTTATCATCGAGAGGAATTCGTAGAGAACAAATTTCATTGCCCCCTCCTGATGATGTAGGAGATTTAGAACTCCCTGATGTGTCTGGCACTGAGGCAGGGGAAACCCGTCTTCAATCTCTCCCAGTGCTTCGATCATTACTACAACGGACACGAGTTTCTAATCTTACCTCTGCATTTAATGCTGCTGATAGGCTTCCAGAAGGGTTTTTGTATACCGACCCGCTCATTTCTAGAATTCAAGAGCAGCCTCCGCCTCCTCCATCTGTCGAGGATAGAGATTCTTTCTCTAGCATTGCTGCTGTGATCAATTCAGAGAGTCAAATCGACACTGCTGTAGAAATCGATTCCATGGTCTCCATTTCAACATCATCCTCCAGAAGAAGAAATGATTCCTTACAGGTTTCTGATGTAGACAGTGGAAACTCTCGGGCACCCAGACGGAGAAGATTGGCTTGA | 1284 | 44.55 | MGDEIFDAMNLDLNLGPVPEPVSNSVLNEDVSLADLTEDPVHRFGEAIRVRTRHRWRRRQAQFPSETQNISLEFSEIMVNSGNGNSLQPLQAGEGSITAEERKNESGKTCEINNEALEDEKEENKSDVEKGSDSDGSFFDCNICLDLARDPVVTCCGHLYCWPCLYRWLHLHSDAKECPVCKGEVTMKNVTPIYGRGSNTPVTEEDAALKIPLRPHARKVETLRQTIQRTAFSFPVEEMIRRLGNRFDFNRDLDQPPEQDSSHETFSRSPTLLNRLLSSRGIRREQISLPPPDDVGDLELPDVSGTEAGETRLQSLPVLRSLLQRTRVSNLTSAFNAADRLPEGFLYTDPLISRIQEQPPPPPSVEDRDSFSSIAAVINSESQIDTAVEIDSMVSISTSSSRRRNDSLQVSDVDSGNSRAPRRRRLA | 427 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 40561630 | 40564135 | - | Sed0011641.1 | Sed02g0370 | 704038 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed02g0370 | 427 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 106 | 367 | IPR045103 | GO:0005783(InterPro)|GO:0006511(PANTHER)|GO:0006511(InterPro)|GO:0044390(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER)|GO:0071712(PANTHER) | |
Sed02g0370 | 427 | CDD | RING-HC_RNF5-like | 139 | 182 | - | - | |
Sed02g0370 | 427 | MobiDBLite | consensus disorder prediction | 250 | 270 | - | - | |
Sed02g0370 | 427 | MobiDBLite | consensus disorder prediction | 396 | 427 | - | - | |
Sed02g0370 | 427 | Pfam | RING-type zinc-finger | 141 | 179 | IPR027370 | - | |
Sed02g0370 | 427 | SMART | ring_2 | 141 | 181 | IPR001841 | - | |
Sed02g0370 | 427 | MobiDBLite | consensus disorder prediction | 85 | 133 | - | - | |
Sed02g0370 | 427 | ProSitePatterns | Zinc finger RING-type signature. | 156 | 165 | IPR017907 | - | |
Sed02g0370 | 427 | FunFam | Zinc finger family protein | 122 | 195 | - | - | |
Sed02g0370 | 427 | ProSiteProfiles | Zinc finger RING-type profile. | 141 | 182 | IPR001841 | - | |
Sed02g0370 | 427 | SUPERFAMILY | RING/U-box | 137 | 194 | - | - | |
Sed02g0370 | 427 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 91 | 201 | IPR013083 | - | |
Sed02g0370 | 427 | MobiDBLite | consensus disorder prediction | 98 | 133 | - | - | |
Sed02g0370 | 427 | MobiDBLite | consensus disorder prediction | 396 | 416 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g0370 | Sed-Chr2:40561630 | Sed12g1275 | Sed-Chr12:9287199 | 3.90E-199 | dispersed | |
Sed02g0370 | Sed-Chr2:40561630 | Sed02g0371 | Sed-Chr2:40561630 | 3.40E-243 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed02g0370 | K10666 | - | csv:101220497 | 734.176 |