Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0459 ATGGCGACATACCTTCATGGCAATTCTGATCAGTTCCAATCTGCTGATGGCGGCCTTCAAACCCTCCTCTTAATGAATCCCACCTATGTTCAATTCTCTGACGCCCCGCCGCCCCCTCCGTCGCACCCGAATCTCGTTTTCTTCAACTCATCTTCGGGTGCTAACACCTTCCCTACACATCATTTGCCTCATGCGCCCTCTCACGCGCAACAATTCGTCGGTATCTCGACCGCGGAGCACGACCACACCTCATACTCCTTGAACTCCCACCACGACGTCTCCGCCTTGCACGGCTTTGTTCCGCGCGTTCACCATGATATTTGGAAGCCAATGGACCCATCCACGGCGGCGCGTGAGAATGCACGCGCTCACCAGGGGTTGTCTTTGAGTCTGTCATCACAGCATCCGCTGGGATTTGGGTGTAGAGATGCTCAATCGCAGCCACAACAGGCGGTTTCCGGCGAGGAAAATGTTCGGATCTCCGGTGGAGCGTCTTCCTCTGCTTCCGGTATCACCAACAATGGCGTCGCCGGAATTCAGGGCGTTTTGATCAGCTCCAAGTATTTCAAGGCTGCACAAGAAATTCTTGATGAAGTTGTTAATGTTACCCAAAATGGAATTAAGAACGAATCGTCTCCGAAAAAGGCCGCCGGAGATCAGAACAAGATGATCGGAGTTGCAGCCTCCGCCGCTGCAACTGCAGACGGTTCGGTCGAGGGAGACGGTGACGGTAAACGAGCCGCCGAGCTCACAACCGCCGAGAGACAAGAAATTCAGATGAAGAAAGCAAAGCTCATCAGTATGCTAGAAGAGGTGGAGCAGAGGTACAGACAGTACCGCCACCAGATGCAGATAGTGATATCGACATTCGAGCACGCGGCCGGGGCCGGATCGGCCAGAACCTACACCGCGCTCGCACTTCAGACGATTTCGAAGCAATTCCAGTGCTTAAAGGAGGCGATCGCGGGCCAGGTCAAAGCGGCGAACAAGAGTTTAGGAGAAGAAGAAAACATGGGAAGAAAAATGGAAGGTTCCCGGTTGAAGTTCGTCGATAACCATCTCCGGCAACAGCGAGCTCTGCAACAATTGGGGATGATCCAACACAATGCTTGGCGACCACAAAGAGGCTTGCCCGAGCGATCCGTTTCGATTCTTCGCGCTTGGCTTTTCGAACACTTTCTTCACCCTTACCCAAAAGATTCAGATAAACACATGCTCGCTAACCAAACAGGGCTCACCAGAAGCCAGGTTTCGAATTGGTTCATAAATGCGAGAGTTCGACTGTGGAAACCAATGGTGGAAGAGATGTACATAGAGGAAATCAAGGAACAAGAACAGAACACCGGCGGTGGCGGTGGAGTTGGCGGATCGGCACCGGCGACGGCGGCGGTAAAAAACACAGAAGATTCAAGTTCAAAATCCATAGAAACAAAAAGCCCCAAATCAAAACAAGAAACCTCCCAAAACCAAAACATTCACCCATCAATCCCATCAAAATTTACCCTCATCGGAGCCTCATCGGAGCTCGACGGAATCACTCAACGAAGCCCCAAAAAACAGAGAGGCCCAGAAATGAAACCCAGAGAAGAAGAACAAAACCAAAATCAAAATCAAATTTCAATGAAATTCGACGAAAACAGAGATGGGTATTCATTTTTAGGGCAACCCCATTTCAACATGGCCGGATTCGGGCAATACCCAATCGGCGAAATGGGAAGATTCGACGCCGATCAGTTCGCTCCAAGGTACGCCGGAAACAATGGCGTTTCTCTGACACTAGGGCTTCCCCACTGCGAAAATCAGCACCAAAGCTTTCTCCAAAATCAGAGCATCCATTTAGGAAGAAGAACAGATATCGGAAAACCCAATGATTTCTCCGCCATTAACGCCTCAACAGCTTCTTTTGAAACAATCAATATTCAGAATGGAAAAAGGTTTGCAGCTCAGTTACTGCCAGATTTTGTGGCCTAA 1971 50.13 MATYLHGNSDQFQSADGGLQTLLLMNPTYVQFSDAPPPPPSHPNLVFFNSSSGANTFPTHHLPHAPSHAQQFVGISTAEHDHTSYSLNSHHDVSALHGFVPRVHHDIWKPMDPSTAARENARAHQGLSLSLSSQHPLGFGCRDAQSQPQQAVSGEENVRISGGASSSASGITNNGVAGIQGVLISSKYFKAAQEILDEVVNVTQNGIKNESSPKKAAGDQNKMIGVAASAAATADGSVEGDGDGKRAAELTTAERQEIQMKKAKLISMLEEVEQRYRQYRHQMQIVISTFEHAAGAGSARTYTALALQTISKQFQCLKEAIAGQVKAANKSLGEEENMGRKMEGSRLKFVDNHLRQQRALQQLGMIQHNAWRPQRGLPERSVSILRAWLFEHFLHPYPKDSDKHMLANQTGLTRSQVSNWFINARVRLWKPMVEEMYIEEIKEQEQNTGGGGGVGGSAPATAAVKNTEDSSSKSIETKSPKSKQETSQNQNIHPSIPSKFTLIGASSELDGITQRSPKKQRGPEMKPREEEQNQNQNQISMKFDENRDGYSFLGQPHFNMAGFGQYPIGEMGRFDADQFAPRYAGNNGVSLTLGLPHCENQHQSFLQNQSIHLGRRTDIGKPNDFSAINASTASFETINIQNGKRFAAQLLPDFVA 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 41804815 41810812 - Sed0002624.2 Sed02g0459 704127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0459 656 FunFam BEL1-like homeodomain protein 9 374 436 - -
Sed02g0459 656 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 122 482 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed02g0459 656 ProSiteProfiles 'Homeobox' domain profile. 368 431 IPR001356 GO:0003677(InterPro)
Sed02g0459 656 Pfam Homeobox KN domain 388 427 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed02g0459 656 Gene3D - 374 436 - -
Sed02g0459 656 MobiDBLite consensus disorder prediction 445 536 - -
Sed02g0459 656 MobiDBLite consensus disorder prediction 481 513 - -
Sed02g0459 656 MobiDBLite consensus disorder prediction 142 171 - -
Sed02g0459 656 CDD homeodomain 371 432 IPR001356 GO:0003677(InterPro)
Sed02g0459 656 SMART HOX_1 371 435 IPR001356 GO:0003677(InterPro)
Sed02g0459 656 Coils Coil 255 289 - -
Sed02g0459 656 SUPERFAMILY Homeodomain-like 372 437 IPR009057 -
Sed02g0459 656 Pfam Associated with HOX 183 322 IPR006563 -
Sed02g0459 656 MobiDBLite consensus disorder prediction 514 531 - -
Sed02g0459 656 SMART prehox3 177 323 IPR006563 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0459 Sed-Chr2:41804815 Sed12g1342 Sed-Chr12:10289584 9.40E-269 dispersed
Sed02g0458 Sed-Chr2:41804815 Sed02g0459 Sed-Chr2:41804815 0.00E+00 tandem
Sed02g0459 Sed-Chr2:41804815 Sed02g0460 Sed-Chr2:41804815 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37517 PF07526 POX 1.20E-45 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0459 - - - 0.0