Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0487 ATGGCTTGCTCCGCCGCCGTCATCGCCGCCAATCCTTCCGCTTTTCCGGCCAAGTCCAATGCGGCTCCCATTGCCCGAACCCTAGCCTTTTCCAAATCTTTCCTCGGCCTTCGCAAGTCCTTCCACCCTACCCTTCCTCGTTCTATTTCCTCCTCCCGTGGTGCCCGTTCCCGTCGGAGCTTTGCTGTTCGGGCTTCTAGTGAACTTCCATTGGTTGGAAATGTAGCTCCAGATTTTGAGGCAGAGGCAGTCTTTGATCAGGAATTTATCAAGGTTAAACTTTCTGAATACATTGGGAAGAAATATGTGATTCTCTTTTTCTACCCATTGGACTTTACCTTTGTTTGCCCTACGGAAATTACCGCTTTCAGTGATCGGTATGAAGAATTCAAGCAGCTAAACACAGAAGTCTTGGGTGTTTCAATTGACAGTGTTTTCTCACATCTTGCTTGGGTCCAAACTGATAGAAAGTCTGGTGGCCTTGGTGATCTTCAGTATCCACTGGTTTCTGATGTCACAAAATCAATTTCAAAATCTTTTGGTGTGCTAATCCCAGATCAGGGAATTGCATTGAGAGGCCTTTTCATAATTGACAAGGAAGGAGTCATCCAACACTCTACCATAAACAATCTGGCCATCGGTCGAAGCGTAGACGAGACAAAGAGAACCCTCCAAGCCTTGCAATATGTACAGGAGAACCCAGATGAAGTTTGCCCAGCTGGATGGAAGCCTGGGGAGAAGTCAATGAAGCCAGACCCCAAGGGTAGCAAAGAGTACTTTTCTGCTATTGCTTAA 795 46.79 MACSAAVIAANPSAFPAKSNAAPIARTLAFSKSFLGLRKSFHPTLPRSISSSRGARSRRSFAVRASSELPLVGNVAPDFEAEAVFDQEFIKVKLSEYIGKKYVILFFYPLDFTFVCPTEITAFSDRYEEFKQLNTEVLGVSIDSVFSHLAWVQTDRKSGGLGDLQYPLVSDVTKSISKSFGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETKRTLQALQYVQENPDEVCPAGWKPGEKSMKPDPKGSKEYFSAIA 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 42220658 42225260 + Sed0003794.1 Sed02g0487 704155

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0487 264 FunFam 2-Cys peroxiredoxin BAS1, chloroplastic 64 263 - -
Sed02g0487 264 MobiDBLite consensus disorder prediction 241 264 - -
Sed02g0487 264 Pfam AhpC/TSA family 72 205 IPR000866 GO:0016209(InterPro)|GO:0016491(InterPro)
Sed02g0487 264 Gene3D Glutaredoxin 64 264 - -
Sed02g0487 264 SUPERFAMILY Thioredoxin-like 70 261 IPR036249 -
Sed02g0487 264 PANTHER THIOREDOXIN PEROXIDASE 57 263 IPR050217 GO:0006979(PANTHER)|GO:0008379(PANTHER)|GO:0033554(PANTHER)|GO:0042744(PANTHER)|GO:0045454(PANTHER)
Sed02g0487 264 ProSiteProfiles Thioredoxin domain profile. 70 229 IPR013766 -
Sed02g0487 264 CDD PRX_Typ2cys 72 245 - -
Sed02g0487 264 Pfam C-terminal domain of 1-Cys peroxiredoxin 226 261 IPR019479 GO:0051920(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0487 K03386 - - csv:101205559 459.144
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0487 Sed-Chr2:42220658 Sed12g1367 Sed-Chr12:10935791 1.60E-126 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g3 . . Bda03g01197 . Bpe04g01126 . . . . . Cma06g01582 . . . Sed02g0487 Cpe08g00136 . Bhi01g01119 Tan10g1105 Cmetu06g2035 . . . . . . . . . . . Cone14ag0686 . . . Lsi05g01396 . . Cme06g00822 . . . . . . . . . Cmo06g01578 . . . . . . . . . . . . . . Cla05g00729 Cam05g0798 Cec05g0805 Cco05g0807 Clacu05g0787 Cmu05g0750 Cre05g0826 . Csa03g01545 Chy06g00781 .
Vvi5g242 . . . . . . . . . . . . . . Sed02g0487 . . Bhi01g01119 Tan10g1105 Cmetu06g2035 . . . . . . . . . . . Cone14ag0686 . . . . . . . . . . . . . . . . Cmo06g01578 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005920 3 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 39