Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0502 ATGTGGGCAAGCGCCGAAGGAGGGCCGCCGGAGGTGACTCTGGAGACTTCCATGGGATCTTTCACCATTGAGCTTTACTACAAACACGCTCCCAGAACGTGTAGGAACTTCATTGAGCTTTCGCGGCGAGGTTATTACGACAATGTCAAATTTCACCGCATTATTAAGGATTTTGTGGTTCAAGGTGGAGATCCCACTGGAACTGGACGGGGTGGGGAATCTATTTATGGTAAGAAGTTTGAGGATGAAATTAAACCAGAGTTGAAGCATACAGGAGCTGGTATTCTATCAATGGCAAATGCTGGTCCTGATACAAACGGAAGCCAGTTCTTTATCACTCTTGCTCCTTGTCCATCCCTGGATGGGAAGCACTCCATCTTTGGACGGGTTTGTAGGGGAATGGAAATAATCAAACGGCTTGGCAGTGTTCAAACTGATAACAATGATAGACCCATCCATGATGTGAAAATGCTACGGGCATCGGTTAAAGACTAA 495 46.26 MWASAEGGPPEVTLETSMGSFTIELYYKHAPRTCRNFIELSRRGYYDNVKFHRIIKDFVVQGGDPTGTGRGGESIYGKKFEDEIKPELKHTGAGILSMANAGPDTNGSQFFITLAPCPSLDGKHSIFGRVCRGMEIIKRLGSVQTDNNDRPIHDVKMLRASVKD 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 42571865 42576715 + Sed0021332.1 Sed02g0502 704170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0502 164 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 109 121 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Sed02g0502 164 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 51 63 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Sed02g0502 164 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 137 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Sed02g0502 164 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 94 109 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Sed02g0502 164 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 25 40 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Sed02g0502 164 SUPERFAMILY Cyclophilin-like 11 162 IPR029000 -
Sed02g0502 164 FunFam Peptidyl-prolyl cis-trans isomerase 2 164 - -
Sed02g0502 164 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 46 63 IPR020892 GO:0003755(InterPro)|GO:0006457(InterPro)
Sed02g0502 164 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 12 162 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Sed02g0502 164 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 15 162 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Sed02g0502 164 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 9 159 IPR044666 GO:0000413(PANTHER)|GO:0003755(PANTHER)|GO:0071013(PANTHER)
Sed02g0502 164 PIRSF Peptidylpro_ismrse 3 164 IPR024936 GO:0003755(InterPro)
Sed02g0502 164 Gene3D - 3 164 IPR029000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0502 Sed-Chr2:42571865 Sed03g1888 Sed-Chr3:12794302 8.10E-44 dispersed
Sed02g0502 Sed-Chr2:42571865 Sed09g0360 Sed-Chr9:3245618 3.20E-32 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0502 K12733 - csv:101222111 332.798