Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed02g0545 | ATGGAAATTGCTTTTCTTCTTCACCCAATTTTGTTCCTTTTATTCATCTTTCTAATCATCTTCTTCTTAAAGCCCAAATTTCTGTGCAACTGCGAAATTTGCCAAGCTTATTTAACTTCATCTTGGTCGAAAAATTTCATCAACCTCTGCGATTGGTACGCCCATCTTCTCCGGCAATCGCCGACGAAGACGATCCACATCCACGTCTTACGGAACACGATCACGGCGAATCCCGACAACGTCGAATACATCCTCAAAACCAAATTCCAAAACTACCCAAAAGGAAAGACCTTCTCTTCAATTCTTGCCGATTTTTTGGGCCGAGGAATTTTCAACGTGGACGGCGATTTGTGGCGGTTCCAGAAGAAAATGGCGATTCTCGAACTGGGTCGGCAGTCGATTCGATCCTACTGCTTTGAAATCGTTTGCCACGAGATTCATTCCCGGCTCTTGCCGCTGCTCTCGTCGGCGGCCGGCGGCTGCGGTGTGGTGGATTTGCAAGACGTGTTTAATAGGTTTGCTTTTGATGTTATTTGTAAGTTCTCGTTTGGGTTGGATCCGAGATGCTTGGAGCTGTCTCTTCCGATGACGGATTTCGCCGTCGCTTTCGACGTTGCGGCGAAGCTTTCTGCTCGGAGAGCCATGGCGGCGCCGCCGTTCATCTGGAAAATCAAGCGGACGCTTAATTTAGGTAGCGAGAGGAAACTGAAAAAAGCAATAAAGCTAATAAACATGTTAGCTGGAGAAGTAATCCGACAGCGAAGAAAACTAGGAGGAATAATCTCAAACCACAACGATCTGCTTTCTCACTTCATGCAAACCGTCTCCGATGAAACTTACCTACGAGACATTGTCGTGAGCTTCCTGCTGGCCGGTCGCGACACCGTCGCCTCCGCCTTGACCAGCTTCTTCTACCTCCTCTCCGCCCATCCCCACGTCGACTCCGCCATCCACCTCGAATCCAACCGGCTCATCGGCCCCGACACCGACCCCACAAACTTCGACCAAACCCGACACCTTCATTACTTACACGCCGCCATTTTCGAGTCCATGAGACTCCTCCCGCCAATTCAATTCGACTCTAAGTTTTGTGAGGACGACGACGTTTTGCCCGATGGGACTTTCGTCCGACGTGGAACTCGGGTCACTTACCACCCCTACGCCATGGGTCGGGTTGAGGATATCTGGGGCCCGGACTGCCTTGAGTTTGACCCCGCTCGGTGGCTGAGACATGGTGTCTTCTGCCCCGAGAACCCATTTAAGTACCCCGTTTTTCAAGGCGGGCTTCGGTTTTGTTTGGGGAAGGAAATGGCGCTGCTTGAGTTGAAAATGGTTGTGCTTTCGGTTGTTCGTCGGTTTCGCTTTCGGTCGGTTACGCCGTGTGTGGCGCCTCGATTCTCCCCTAGCCTCACCGCTACATTCTCCGGCGGGTTTCGGGTTTTTGTAAGTGAGAAGAATAAGAAAGACGGGTAG | 1473 | 50.85 | MEIAFLLHPILFLLFIFLIIFFLKPKFLCNCEICQAYLTSSWSKNFINLCDWYAHLLRQSPTKTIHIHVLRNTITANPDNVEYILKTKFQNYPKGKTFSSILADFLGRGIFNVDGDLWRFQKKMAILELGRQSIRSYCFEIVCHEIHSRLLPLLSSAAGGCGVVDLQDVFNRFAFDVICKFSFGLDPRCLELSLPMTDFAVAFDVAAKLSARRAMAAPPFIWKIKRTLNLGSERKLKKAIKLINMLAGEVIRQRRKLGGIISNHNDLLSHFMQTVSDETYLRDIVVSFLLAGRDTVASALTSFFYLLSAHPHVDSAIHLESNRLIGPDTDPTNFDQTRHLHYLHAAIFESMRLLPPIQFDSKFCEDDDVLPDGTFVRRGTRVTYHPYAMGRVEDIWGPDCLEFDPARWLRHGVFCPENPFKYPVFQGGLRFCLGKEMALLELKMVVLSVVRRFRFRSVTPCVAPRFSPSLTATFSGGFRVFVSEKNKKDG | 490 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 43006251 | 43009906 | + | Sed0024137.1 | Sed02g0545 | 704213 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed02g0545 | 490 | CDD | CYP86A | 61 | 478 | - | - | |
| Sed02g0545 | 490 | SUPERFAMILY | Cytochrome P450 | 48 | 482 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g0545 | 490 | PRINTS | P450 superfamily signature | 432 | 443 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g0545 | 490 | PRINTS | P450 superfamily signature | 291 | 308 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g0545 | 490 | PRINTS | P450 superfamily signature | 345 | 356 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g0545 | 490 | PRINTS | P450 superfamily signature | 423 | 432 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g0545 | 490 | PRINTS | E-class P450 group I signature | 280 | 297 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g0545 | 490 | PRINTS | E-class P450 group I signature | 432 | 455 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g0545 | 490 | PRINTS | E-class P450 group I signature | 422 | 432 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g0545 | 490 | PRINTS | E-class P450 group I signature | 300 | 326 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g0545 | 490 | Gene3D | Cytochrome P450 | 41 | 489 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g0545 | 490 | PANTHER | CYTOCHROME P450 | 28 | 477 | - | - | |
| Sed02g0545 | 490 | Pfam | Cytochrome P450 | 71 | 456 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed02g0545 | Sed-Chr2:43006251 | Sed03g1890 | Sed-Chr3:12820473 | 1.30E-169 | dispersed | |
| Sed02g0545 | Sed-Chr2:43006251 | Sed08g0036 | Sed-Chr8:169980 | 1.40E-115 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed02g0545 | K20624 | - | csv:101207686 | 764.222 |